(12 nodes) U4 snRNA 3-end processing network (Brachypodium distachyon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0Q3IBZ7	S1 domain-containing protein. (380 aa)
	A0A0Q3KDH1	KH_dom_type_1 domain-containing protein. (249 aa)
	A0A0Q3LTX8	Uncharacterized protein. (207 aa)
	A0A2K2D3F7	Uncharacterized protein. (446 aa)
	I1GKN8_BRADI	RNase_PH domain-containing protein. (238 aa)
	I1GLV1_BRADI	S1 domain-containing protein. (319 aa)
	I1GS12_BRADI	Uncharacterized protein. (262 aa)
	I1GUB8_BRADI	Uncharacterized protein. (286 aa)
	I1HGJ4_BRADI	Uncharacterized protein. (242 aa)
	I1I1T0_BRADI	Uncharacterized protein. (286 aa)
	I1ILX3_BRADI	Uncharacterized protein. (307 aa)
	I1ISN9_BRADI	Uncharacterized protein. (199 aa)

Your Current Organism:

Brachypodium distachyon

NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0Q3IBZ7	A0A0Q3KDH1	A0A0Q3IBZ7	A0A0Q3KDH1	S1 domain-containing protein.	KH_dom_type_1 domain-containing protein.	0.995
A0A0Q3IBZ7	A0A0Q3LTX8	A0A0Q3IBZ7	A0A0Q3LTX8	S1 domain-containing protein.	Uncharacterized protein.	0.992
A0A0Q3IBZ7	A0A2K2D3F7	A0A0Q3IBZ7	A0A2K2D3F7	S1 domain-containing protein.	Uncharacterized protein.	0.994
A0A0Q3IBZ7	I1GKN8_BRADI	A0A0Q3IBZ7	I1GKN8	S1 domain-containing protein.	RNase_PH domain-containing protein.	0.994
A0A0Q3IBZ7	I1GLV1_BRADI	A0A0Q3IBZ7	I1GLV1	S1 domain-containing protein.	S1 domain-containing protein.	0.901
A0A0Q3IBZ7	I1GS12_BRADI	A0A0Q3IBZ7	I1GS12	S1 domain-containing protein.	Uncharacterized protein.	0.991
A0A0Q3IBZ7	I1GUB8_BRADI	A0A0Q3IBZ7	I1GUB8	S1 domain-containing protein.	Uncharacterized protein.	0.987
A0A0Q3IBZ7	I1HGJ4_BRADI	A0A0Q3IBZ7	I1HGJ4	S1 domain-containing protein.	Uncharacterized protein.	0.992
A0A0Q3IBZ7	I1I1T0_BRADI	A0A0Q3IBZ7	I1I1T0	S1 domain-containing protein.	Uncharacterized protein.	0.987
A0A0Q3IBZ7	I1ILX3_BRADI	A0A0Q3IBZ7	I1ILX3	S1 domain-containing protein.	Uncharacterized protein.	0.993
A0A0Q3IBZ7	I1ISN9_BRADI	A0A0Q3IBZ7	I1ISN9	S1 domain-containing protein.	Uncharacterized protein.	0.994
A0A0Q3KDH1	A0A0Q3IBZ7	A0A0Q3KDH1	A0A0Q3IBZ7	KH_dom_type_1 domain-containing protein.	S1 domain-containing protein.	0.995
A0A0Q3KDH1	A0A0Q3LTX8	A0A0Q3KDH1	A0A0Q3LTX8	KH_dom_type_1 domain-containing protein.	Uncharacterized protein.	0.997
A0A0Q3KDH1	A0A2K2D3F7	A0A0Q3KDH1	A0A2K2D3F7	KH_dom_type_1 domain-containing protein.	Uncharacterized protein.	0.998
A0A0Q3KDH1	I1GKN8_BRADI	A0A0Q3KDH1	I1GKN8	KH_dom_type_1 domain-containing protein.	RNase_PH domain-containing protein.	0.998
A0A0Q3KDH1	I1GLV1_BRADI	A0A0Q3KDH1	I1GLV1	KH_dom_type_1 domain-containing protein.	S1 domain-containing protein.	0.995
A0A0Q3KDH1	I1GS12_BRADI	A0A0Q3KDH1	I1GS12	KH_dom_type_1 domain-containing protein.	Uncharacterized protein.	0.995
A0A0Q3KDH1	I1GUB8_BRADI	A0A0Q3KDH1	I1GUB8	KH_dom_type_1 domain-containing protein.	Uncharacterized protein.	0.995
A0A0Q3KDH1	I1HGJ4_BRADI	A0A0Q3KDH1	I1HGJ4	KH_dom_type_1 domain-containing protein.	Uncharacterized protein.	0.995
A0A0Q3KDH1	I1I1T0_BRADI	A0A0Q3KDH1	I1I1T0	KH_dom_type_1 domain-containing protein.	Uncharacterized protein.	0.995