(12 nodes) Mixed, incl. Wound-induced protein, and GPI-anchored protein LORELEI-like network (Brachypodium distachyon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0Q3KID4	Knot1 domain-containing protein; Belongs to the DEFL family. (75 aa)
	A0A0Q3LF90	Uncharacterized protein. (141 aa)
	A0A2K2D571	Uncharacterized protein. (216 aa)
	A0A2K2DKD4	FAS1 domain-containing protein. (237 aa)
	I1GW84_BRADI	CRIB domain-containing protein. (172 aa)
	I1HGR6_BRADI	Uncharacterized protein. (201 aa)
	I1ILE7_BRADI	Uncharacterized protein. (166 aa)
	I1IRP8_BRADI	Uncharacterized protein. (185 aa)
	I1IRW2_BRADI	Uncharacterized protein. (131 aa)
	I1IZB1_BRADI	Uncharacterized protein. (143 aa)
	I1J2A7_BRADI	Uncharacterized protein. (88 aa)
	I1J2A8_BRADI	Uncharacterized protein. (89 aa)

Your Current Organism:

Brachypodium distachyon

NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0Q3KID4	A0A0Q3LF90	A0A0Q3KID4	A0A0Q3LF90	Knot1 domain-containing protein; Belongs to the DEFL family.	Uncharacterized protein.	0.415
A0A0Q3KID4	A0A2K2D571	A0A0Q3KID4	A0A2K2D571	Knot1 domain-containing protein; Belongs to the DEFL family.	Uncharacterized protein.	0.494
A0A0Q3KID4	A0A2K2DKD4	A0A0Q3KID4	A0A2K2DKD4	Knot1 domain-containing protein; Belongs to the DEFL family.	FAS1 domain-containing protein.	0.516
A0A0Q3KID4	I1GW84_BRADI	A0A0Q3KID4	I1GW84	Knot1 domain-containing protein; Belongs to the DEFL family.	CRIB domain-containing protein.	0.467
A0A0Q3KID4	I1HGR6_BRADI	A0A0Q3KID4	I1HGR6	Knot1 domain-containing protein; Belongs to the DEFL family.	Uncharacterized protein.	0.481
A0A0Q3KID4	I1ILE7_BRADI	A0A0Q3KID4	I1ILE7	Knot1 domain-containing protein; Belongs to the DEFL family.	Uncharacterized protein.	0.470
A0A0Q3KID4	I1IRP8_BRADI	A0A0Q3KID4	I1IRP8	Knot1 domain-containing protein; Belongs to the DEFL family.	Uncharacterized protein.	0.461
A0A0Q3KID4	I1IRW2_BRADI	A0A0Q3KID4	I1IRW2	Knot1 domain-containing protein; Belongs to the DEFL family.	Uncharacterized protein.	0.467
A0A0Q3KID4	I1IZB1_BRADI	A0A0Q3KID4	I1IZB1	Knot1 domain-containing protein; Belongs to the DEFL family.	Uncharacterized protein.	0.514
A0A0Q3KID4	I1J2A7_BRADI	A0A0Q3KID4	I1J2A7	Knot1 domain-containing protein; Belongs to the DEFL family.	Uncharacterized protein.	0.489
A0A0Q3KID4	I1J2A8_BRADI	A0A0Q3KID4	I1J2A8	Knot1 domain-containing protein; Belongs to the DEFL family.	Uncharacterized protein.	0.482
A0A0Q3LF90	A0A0Q3KID4	A0A0Q3LF90	A0A0Q3KID4	Uncharacterized protein.	Knot1 domain-containing protein; Belongs to the DEFL family.	0.415
A0A0Q3LF90	A0A2K2D571	A0A0Q3LF90	A0A2K2D571	Uncharacterized protein.	Uncharacterized protein.	0.504
A0A0Q3LF90	A0A2K2DKD4	A0A0Q3LF90	A0A2K2DKD4	Uncharacterized protein.	FAS1 domain-containing protein.	0.489
A0A0Q3LF90	I1GW84_BRADI	A0A0Q3LF90	I1GW84	Uncharacterized protein.	CRIB domain-containing protein.	0.527
A0A0Q3LF90	I1HGR6_BRADI	A0A0Q3LF90	I1HGR6	Uncharacterized protein.	Uncharacterized protein.	0.466
A0A0Q3LF90	I1ILE7_BRADI	A0A0Q3LF90	I1ILE7	Uncharacterized protein.	Uncharacterized protein.	0.473
A0A0Q3LF90	I1IRP8_BRADI	A0A0Q3LF90	I1IRP8	Uncharacterized protein.	Uncharacterized protein.	0.480
A0A0Q3LF90	I1IRW2_BRADI	A0A0Q3LF90	I1IRW2	Uncharacterized protein.	Uncharacterized protein.	0.471
A0A0Q3LF90	I1IZB1_BRADI	A0A0Q3LF90	I1IZB1	Uncharacterized protein.	Uncharacterized protein.	0.480