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A0A0Q3S6F6 A0A0Q3S6F6 I1HVJ4_BRADI I1HVJ4_BRADI I1HWR8_BRADI I1HWR8_BRADI I1HXV4_BRADI I1HXV4_BRADI I1HZD7_BRADI I1HZD7_BRADI I1IRS8_BRADI I1IRS8_BRADI
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A0Q3S6F6Small nuclear ribonucleoprotein-associated protein. (263 aa)
I1HVJ4_BRADISmall nuclear ribonucleoprotein Sm D2. (106 aa)
I1HWR8_BRADISmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
I1HXV4_BRADISm domain-containing protein. (86 aa)
I1HZD7_BRADIU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (211 aa)
I1IRS8_BRADISmall nuclear ribonucleoprotein G. (81 aa)
Your Current Organism:
Brachypodium distachyon
NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome
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