(13 nodes) Mixed, incl. Not2/Not3/Not5, and Cell differentiation family, Rcd1-like network (Brachypodium distachyon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0Q3F2A8	Uncharacterized protein. (1175 aa)
	A0A0Q3IC17	Uncharacterized protein. (2400 aa)
	A0A0Q3LDF0	Uncharacterized protein. (341 aa)
	A0A0Q3QP74	Uncharacterized protein. (839 aa)
	A0A2K2DVT3	Uncharacterized protein. (2471 aa)
	I1GPX1_BRADI	Uncharacterized protein. (866 aa)
	I1H819_BRADI	Uncharacterized protein. (323 aa)
	I1HIA6_BRADI	NOT2_3_5 domain-containing protein. (571 aa)
	I1I3X8_BRADI	Uncharacterized protein. (605 aa)
	I1IIT6_BRADI	Uncharacterized protein. (824 aa)
	I1ITP9_BRADI	Uncharacterized protein. (436 aa)
	I1J1R9_BRADI	Uncharacterized protein. (320 aa)
	I1J397_BRADI	NOT2_3_5 domain-containing protein. (622 aa)

Your Current Organism:

Brachypodium distachyon

NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0Q3F2A8	A0A0Q3IC17	A0A0Q3F2A8	A0A0Q3IC17	Uncharacterized protein.	Uncharacterized protein.	0.953
A0A0Q3F2A8	A0A0Q3LDF0	A0A0Q3F2A8	A0A0Q3LDF0	Uncharacterized protein.	Uncharacterized protein.	0.918
A0A0Q3F2A8	A0A0Q3QP74	A0A0Q3F2A8	A0A0Q3QP74	Uncharacterized protein.	Uncharacterized protein.	0.915
A0A0Q3F2A8	A0A2K2DVT3	A0A0Q3F2A8	A0A2K2DVT3	Uncharacterized protein.	Uncharacterized protein.	0.953
A0A0Q3F2A8	I1GPX1_BRADI	A0A0Q3F2A8	I1GPX1	Uncharacterized protein.	Uncharacterized protein.	0.973
A0A0Q3F2A8	I1H819_BRADI	A0A0Q3F2A8	I1H819	Uncharacterized protein.	Uncharacterized protein.	0.918
A0A0Q3F2A8	I1HIA6_BRADI	A0A0Q3F2A8	I1HIA6	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.949
A0A0Q3F2A8	I1I3X8_BRADI	A0A0Q3F2A8	I1I3X8	Uncharacterized protein.	Uncharacterized protein.	0.926
A0A0Q3F2A8	I1IIT6_BRADI	A0A0Q3F2A8	I1IIT6	Uncharacterized protein.	Uncharacterized protein.	0.851
A0A0Q3F2A8	I1ITP9_BRADI	A0A0Q3F2A8	I1ITP9	Uncharacterized protein.	Uncharacterized protein.	0.851
A0A0Q3F2A8	I1J1R9_BRADI	A0A0Q3F2A8	I1J1R9	Uncharacterized protein.	Uncharacterized protein.	0.918
A0A0Q3F2A8	I1J397_BRADI	A0A0Q3F2A8	I1J397	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.949
A0A0Q3IC17	A0A0Q3F2A8	A0A0Q3IC17	A0A0Q3F2A8	Uncharacterized protein.	Uncharacterized protein.	0.953
A0A0Q3IC17	A0A0Q3LDF0	A0A0Q3IC17	A0A0Q3LDF0	Uncharacterized protein.	Uncharacterized protein.	0.946
A0A0Q3IC17	A0A0Q3QP74	A0A0Q3IC17	A0A0Q3QP74	Uncharacterized protein.	Uncharacterized protein.	0.953
A0A0Q3IC17	A0A2K2DVT3	A0A0Q3IC17	A0A2K2DVT3	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A0Q3IC17	I1GPX1_BRADI	A0A0Q3IC17	I1GPX1	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A0Q3IC17	I1H819_BRADI	A0A0Q3IC17	I1H819	Uncharacterized protein.	Uncharacterized protein.	0.946
A0A0Q3IC17	I1HIA6_BRADI	A0A0Q3IC17	I1HIA6	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.978
A0A0Q3IC17	I1I3X8_BRADI	A0A0Q3IC17	I1I3X8	Uncharacterized protein.	Uncharacterized protein.	0.965