26 items (Brachypodium distachyon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0Q3MAD1	Uncharacterized protein. (350 aa)
	A0A0Q3H9X2	MPN domain-containing protein. (2357 aa)
	A0A0Q3HE10	Nop domain-containing protein. (532 aa)
	A0A0Q3NY79	Sm domain-containing protein. (99 aa)
	A0A2K2CJT5	Uncharacterized protein. (575 aa)
	I1IYQ1_BRADI	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
	I1IYP8_BRADI	Uncharacterized protein. (57 aa)
	I1IVM6_BRADI	Uncharacterized protein. (401 aa)
	I1IRS8_BRADI	Small nuclear ribonucleoprotein G. (81 aa)
	I1IKV8_BRADI	Uncharacterized protein. (633 aa)
	I1IG91_BRADI	Uncharacterized protein. (597 aa)
	I1IB12_BRADI	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
	I1I537_BRADI	Uncharacterized protein. (960 aa)
	I1I3E7_BRADI	Uncharacterized protein. (223 aa)
	I1I1N0_BRADI	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	I1HZD7_BRADI	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (211 aa)
	I1HXV4_BRADI	Sm domain-containing protein. (86 aa)
	I1HWR8_BRADI	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	I1HW00_BRADI	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (134 aa)
	I1HVJ4_BRADI	Small nuclear ribonucleoprotein Sm D2. (106 aa)
	I1HE26_BRADI	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (142 aa)
	I1H7F5_BRADI	Uncharacterized protein. (230 aa)
	I1GXL3_BRADI	WD_REPEATS_REGION domain-containing protein. (340 aa)
	I1GVQ2_BRADI	Sm domain-containing protein. (86 aa)
	I1GSG1_BRADI	Small nuclear ribonucleoprotein G. (80 aa)
	A0A2K2CT71	Coilin_N domain-containing protein. (700 aa)

Your Current Organism:

Brachypodium distachyon

NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0Q3H9X2	A0A0Q3HE10	A0A0Q3H9X2	A0A0Q3HE10	MPN domain-containing protein.	Nop domain-containing protein.	0.978
A0A0Q3H9X2	A0A0Q3NY79	A0A0Q3H9X2	A0A0Q3NY79	MPN domain-containing protein.	Sm domain-containing protein.	0.990
A0A0Q3H9X2	I1GSG1_BRADI	A0A0Q3H9X2	I1GSG1	MPN domain-containing protein.	Small nuclear ribonucleoprotein G.	0.989
A0A0Q3H9X2	I1GVQ2_BRADI	A0A0Q3H9X2	I1GVQ2	MPN domain-containing protein.	Sm domain-containing protein.	0.980
A0A0Q3H9X2	I1HE26_BRADI	A0A0Q3H9X2	I1HE26	MPN domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.971
A0A0Q3H9X2	I1HVJ4_BRADI	A0A0Q3H9X2	I1HVJ4	MPN domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.995
A0A0Q3H9X2	I1HW00_BRADI	A0A0Q3H9X2	I1HW00	MPN domain-containing protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.990
A0A0Q3H9X2	I1HWR8_BRADI	A0A0Q3H9X2	I1HWR8	MPN domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.988
A0A0Q3H9X2	I1HXV4_BRADI	A0A0Q3H9X2	I1HXV4	MPN domain-containing protein.	Sm domain-containing protein.	0.980
A0A0Q3H9X2	I1HZD7_BRADI	A0A0Q3H9X2	I1HZD7	MPN domain-containing protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.822
A0A0Q3H9X2	I1I1N0_BRADI	A0A0Q3H9X2	I1I1N0	MPN domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.988
A0A0Q3H9X2	I1I537_BRADI	A0A0Q3H9X2	I1I537	MPN domain-containing protein.	Uncharacterized protein.	0.995
A0A0Q3H9X2	I1IB12_BRADI	A0A0Q3H9X2	I1IB12	MPN domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.977
A0A0Q3H9X2	I1IRS8_BRADI	A0A0Q3H9X2	I1IRS8	MPN domain-containing protein.	Small nuclear ribonucleoprotein G.	0.989
A0A0Q3H9X2	I1IVM6_BRADI	A0A0Q3H9X2	I1IVM6	MPN domain-containing protein.	Uncharacterized protein.	0.968
A0A0Q3H9X2	I1IYP8_BRADI	A0A0Q3H9X2	I1IYP8	MPN domain-containing protein.	Uncharacterized protein.	0.952
A0A0Q3H9X2	I1IYQ1_BRADI	A0A0Q3H9X2	I1IYQ1	MPN domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.977
A0A0Q3HE10	A0A0Q3H9X2	A0A0Q3HE10	A0A0Q3H9X2	Nop domain-containing protein.	MPN domain-containing protein.	0.978
A0A0Q3HE10	A0A0Q3NY79	A0A0Q3HE10	A0A0Q3NY79	Nop domain-containing protein.	Sm domain-containing protein.	0.978
A0A0Q3HE10	I1GSG1_BRADI	A0A0Q3HE10	I1GSG1	Nop domain-containing protein.	Small nuclear ribonucleoprotein G.	0.966