STRINGSTRING
I1IB12_BRADI I1IB12_BRADI A0A0Q3NY79 A0A0Q3NY79 A0A0Q3S6F6 A0A0Q3S6F6 A0A2K2CNY1 A0A2K2CNY1 I1GKH1_BRADI I1GKH1_BRADI I1GKZ5_BRADI I1GKZ5_BRADI I1GSG1_BRADI I1GSG1_BRADI I1GUR6_BRADI I1GUR6_BRADI I1GVQ2_BRADI I1GVQ2_BRADI I1GXP7_BRADI I1GXP7_BRADI I1H8A0_BRADI I1H8A0_BRADI I1H957_BRADI I1H957_BRADI I1HVJ4_BRADI I1HVJ4_BRADI I1HW00_BRADI I1HW00_BRADI I1HWR8_BRADI I1HWR8_BRADI I1HXV4_BRADI I1HXV4_BRADI I1HZD7_BRADI I1HZD7_BRADI I1I1N0_BRADI I1I1N0_BRADI I1I319_BRADI I1I319_BRADI I1I596_BRADI I1I596_BRADI I1I6R6_BRADI I1I6R6_BRADI I1IBE2_BRADI I1IBE2_BRADI I1IRS8_BRADI I1IRS8_BRADI I1IYP8_BRADI I1IYP8_BRADI I1IYQ1_BRADI I1IYQ1_BRADI
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
I1IB12_BRADISmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
A0A0Q3NY79Sm domain-containing protein. (99 aa)
A0A0Q3S6F6Small nuclear ribonucleoprotein-associated protein. (263 aa)
A0A2K2CNY1Uncharacterized protein. (936 aa)
I1GKH1_BRADIUncharacterized protein. (339 aa)
I1GKZ5_BRADIUncharacterized protein. (410 aa)
I1GSG1_BRADISmall nuclear ribonucleoprotein G. (80 aa)
I1GUR6_BRADIUncharacterized protein. (353 aa)
I1GVQ2_BRADISm domain-containing protein. (86 aa)
I1GXP7_BRADIUncharacterized protein. (998 aa)
I1H8A0_BRADIUncharacterized protein. (724 aa)
I1H957_BRADIUncharacterized protein. (418 aa)
I1HVJ4_BRADISmall nuclear ribonucleoprotein Sm D2. (106 aa)
I1HW00_BRADISmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (134 aa)
I1HWR8_BRADISmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
I1HXV4_BRADISm domain-containing protein. (86 aa)
I1HZD7_BRADIU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (211 aa)
I1I1N0_BRADISmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
I1I319_BRADIRRM domain-containing protein. (475 aa)
I1I596_BRADIRRM domain-containing protein. (478 aa)
I1I6R6_BRADIUncharacterized protein. (1155 aa)
I1IBE2_BRADIUncharacterized protein. (417 aa)
I1IRS8_BRADISmall nuclear ribonucleoprotein G. (81 aa)
I1IYP8_BRADIUncharacterized protein. (57 aa)
I1IYQ1_BRADISmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
Your Current Organism:
Brachypodium distachyon
NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome
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