28 items (Brachypodium distachyon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1IYP8_BRADI	Uncharacterized protein. (57 aa)
	I1IEF7_BRADI	PSP domain-containing protein. (572 aa)
	I1IIQ1_BRADI	PRP38_assoc domain-containing protein. (392 aa)
	I1J302_BRADI	Uncharacterized protein. (110 aa)
	I1IYQ1_BRADI	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
	A0A0Q3IDE8	Uncharacterized protein. (76 aa)
	I1IRS8_BRADI	Small nuclear ribonucleoprotein G. (81 aa)
	I1I1N0_BRADI	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	I1I1J6_BRADI	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
	I1HWR8_BRADI	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	A0A0Q3GMN5	Uncharacterized protein. (362 aa)
	I1HW00_BRADI	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (134 aa)
	I1HVJ4_BRADI	Small nuclear ribonucleoprotein Sm D2. (106 aa)
	I1HTR1_BRADI	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	I1HL97_BRADI	Uncharacterized protein. (407 aa)
	I1HFQ8_BRADI	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
	I1HF11_BRADI	Uncharacterized protein. (517 aa)
	I1H8P4_BRADI	Splicing factor subunit; Belongs to the SF3B5 family. (87 aa)
	I1H7K6_BRADI	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	I1H1P3_BRADI	Uncharacterized protein. (395 aa)
	I1GZT4_BRADI	Matrin-type domain-containing protein. (243 aa)
	I1GYX6_BRADI	Uncharacterized protein. (862 aa)
	I1GSG1_BRADI	Small nuclear ribonucleoprotein G. (80 aa)
	A0A0Q3RGZ0	RRM domain-containing protein. (175 aa)
	A0A0Q3NY79	Sm domain-containing protein. (99 aa)
	A0A0Q3J3I1	RRM domain-containing protein. (127 aa)
	I1I302_BRADI	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	I1IB12_BRADI	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)

Your Current Organism:

Brachypodium distachyon

NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0Q3GMN5	A0A0Q3IDE8	A0A0Q3GMN5	A0A0Q3IDE8	Uncharacterized protein.	Uncharacterized protein.	0.956
A0A0Q3GMN5	A0A0Q3J3I1	A0A0Q3GMN5	A0A0Q3J3I1	Uncharacterized protein.	RRM domain-containing protein.	0.815
A0A0Q3GMN5	A0A0Q3NY79	A0A0Q3GMN5	A0A0Q3NY79	Uncharacterized protein.	Sm domain-containing protein.	0.911
A0A0Q3GMN5	A0A0Q3RGZ0	A0A0Q3GMN5	A0A0Q3RGZ0	Uncharacterized protein.	RRM domain-containing protein.	0.815
A0A0Q3GMN5	I1GSG1_BRADI	A0A0Q3GMN5	I1GSG1	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.917
A0A0Q3GMN5	I1H7K6_BRADI	A0A0Q3GMN5	I1H7K6	Uncharacterized protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.616
A0A0Q3GMN5	I1H8P4_BRADI	A0A0Q3GMN5	I1H8P4	Uncharacterized protein.	Splicing factor subunit; Belongs to the SF3B5 family.	0.956
A0A0Q3GMN5	I1HFQ8_BRADI	A0A0Q3GMN5	I1HFQ8	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.807
A0A0Q3GMN5	I1HTR1_BRADI	A0A0Q3GMN5	I1HTR1	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.827
A0A0Q3GMN5	I1HVJ4_BRADI	A0A0Q3GMN5	I1HVJ4	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.961
A0A0Q3GMN5	I1HW00_BRADI	A0A0Q3GMN5	I1HW00	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.911
A0A0Q3GMN5	I1HWR8_BRADI	A0A0Q3GMN5	I1HWR8	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.928
A0A0Q3GMN5	I1I1J6_BRADI	A0A0Q3GMN5	I1I1J6	Uncharacterized protein.	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	0.819
A0A0Q3GMN5	I1I1N0_BRADI	A0A0Q3GMN5	I1I1N0	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.928
A0A0Q3GMN5	I1I302_BRADI	A0A0Q3GMN5	I1I302	Uncharacterized protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.616
A0A0Q3GMN5	I1IB12_BRADI	A0A0Q3GMN5	I1IB12	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.898
A0A0Q3GMN5	I1IEF7_BRADI	A0A0Q3GMN5	I1IEF7	Uncharacterized protein.	PSP domain-containing protein.	0.982
A0A0Q3GMN5	I1IIQ1_BRADI	A0A0Q3GMN5	I1IIQ1	Uncharacterized protein.	PRP38_assoc domain-containing protein.	0.701
A0A0Q3GMN5	I1IRS8_BRADI	A0A0Q3GMN5	I1IRS8	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.917
A0A0Q3GMN5	I1IYP8_BRADI	A0A0Q3GMN5	I1IYP8	Uncharacterized protein.	Uncharacterized protein.	0.789