10 items (Brachypodium distachyon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	I1HW00_BRADI	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (134 aa)
	A0A0Q3S6F6	Small nuclear ribonucleoprotein-associated protein. (263 aa)
	A0A0Q3NY79	Sm domain-containing protein. (99 aa)
	A0A0Q3HE10	Nop domain-containing protein. (532 aa)
	I1IYQ1_BRADI	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
	I1IRS8_BRADI	Small nuclear ribonucleoprotein G. (81 aa)
	I1IB12_BRADI	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
	I1I1N0_BRADI	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	I1HWR8_BRADI	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	I1GSG1_BRADI	Small nuclear ribonucleoprotein G. (80 aa)

Your Current Organism:

Brachypodium distachyon

NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0Q3HE10	A0A0Q3NY79	A0A0Q3HE10	A0A0Q3NY79	Nop domain-containing protein.	Sm domain-containing protein.	0.978
A0A0Q3HE10	A0A0Q3S6F6	A0A0Q3HE10	A0A0Q3S6F6	Nop domain-containing protein.	Small nuclear ribonucleoprotein-associated protein.	0.972
A0A0Q3HE10	I1GSG1_BRADI	A0A0Q3HE10	I1GSG1	Nop domain-containing protein.	Small nuclear ribonucleoprotein G.	0.966
A0A0Q3HE10	I1HW00_BRADI	A0A0Q3HE10	I1HW00	Nop domain-containing protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.978
A0A0Q3HE10	I1HWR8_BRADI	A0A0Q3HE10	I1HWR8	Nop domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.983
A0A0Q3HE10	I1I1N0_BRADI	A0A0Q3HE10	I1I1N0	Nop domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.983
A0A0Q3HE10	I1IB12_BRADI	A0A0Q3HE10	I1IB12	Nop domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.942
A0A0Q3HE10	I1IRS8_BRADI	A0A0Q3HE10	I1IRS8	Nop domain-containing protein.	Small nuclear ribonucleoprotein G.	0.966
A0A0Q3HE10	I1IYQ1_BRADI	A0A0Q3HE10	I1IYQ1	Nop domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.942
A0A0Q3NY79	A0A0Q3HE10	A0A0Q3NY79	A0A0Q3HE10	Sm domain-containing protein.	Nop domain-containing protein.	0.978
A0A0Q3NY79	A0A0Q3S6F6	A0A0Q3NY79	A0A0Q3S6F6	Sm domain-containing protein.	Small nuclear ribonucleoprotein-associated protein.	0.994
A0A0Q3NY79	I1GSG1_BRADI	A0A0Q3NY79	I1GSG1	Sm domain-containing protein.	Small nuclear ribonucleoprotein G.	0.993
A0A0Q3NY79	I1HW00_BRADI	A0A0Q3NY79	I1HW00	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.544
A0A0Q3NY79	I1HWR8_BRADI	A0A0Q3NY79	I1HWR8	Sm domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.991
A0A0Q3NY79	I1I1N0_BRADI	A0A0Q3NY79	I1I1N0	Sm domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.991
A0A0Q3NY79	I1IB12_BRADI	A0A0Q3NY79	I1IB12	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.986
A0A0Q3NY79	I1IRS8_BRADI	A0A0Q3NY79	I1IRS8	Sm domain-containing protein.	Small nuclear ribonucleoprotein G.	0.993
A0A0Q3NY79	I1IYQ1_BRADI	A0A0Q3NY79	I1IYQ1	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.986
A0A0Q3S6F6	A0A0Q3HE10	A0A0Q3S6F6	A0A0Q3HE10	Small nuclear ribonucleoprotein-associated protein.	Nop domain-containing protein.	0.972
A0A0Q3S6F6	A0A0Q3NY79	A0A0Q3S6F6	A0A0Q3NY79	Small nuclear ribonucleoprotein-associated protein.	Sm domain-containing protein.	0.994