42 items (Brachypodium distachyon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0Q3GUB6	Uncharacterized protein. (689 aa)
	A0A0Q3IL40	N-acetyltransferase domain-containing protein. (161 aa)
	A0A0Q3J662	N-acetyltransferase domain-containing protein. (441 aa)
	A0A0Q3JH62	Uncharacterized protein. (875 aa)
	A0A0Q3JME6	Uncharacterized protein. (1351 aa)
	A0A0Q3L0I8	N-acetyltransferase domain-containing protein. (435 aa)
	A0A0Q3NZI4	N-acetyltransferase domain-containing protein. (234 aa)
	A0A0Q3PSP7	Glucosamine 6-phosphate N-acetyltransferase. (272 aa)
	A0A2K2CGF6	Uncharacterized protein. (1472 aa)
	A0A2K2DIJ3	N-acetyltransferase domain-containing protein. (423 aa)
	A0A2K2DTQ6	N-acetyltransferase domain-containing protein. (972 aa)
	A0A2K2DUJ7	N-acetyltransferase domain-containing protein. (469 aa)
	I1GMA0_BRADI	N-acetyltransferase domain-containing protein. (209 aa)
	I1GN02_BRADI	N-acetyltransferase domain-containing protein. (387 aa)
	I1GPB2_BRADI	N-acetyltransferase domain-containing protein. (174 aa)
	I1GPR7_BRADI	N-acetyltransferase domain-containing protein. (191 aa)
	I1H2B5_BRADI	N-acetyltransferase domain-containing protein. (292 aa)
	I1H935_BRADI	N-acetyltransferase domain-containing protein. (308 aa)
	I1H9N2_BRADI	N-acetyltransferase domain-containing protein. (221 aa)
	I1HID3_BRADI	N-acetyltransferase domain-containing protein. (249 aa)
	I1HK08_BRADI	Uncharacterized protein. (587 aa)
	I1HNM0_BRADI	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1025 aa)
	I1HPA7_BRADI	N-acetyltransferase domain-containing protein. (181 aa)
	I1I090_BRADI	N-acetyltransferase domain-containing protein. (207 aa)
	I1I2D3_BRADI	N-acetyltransferase domain-containing protein. (276 aa)
	I1I405_BRADI	Uncharacterized protein. (507 aa)
	I1ICT7_BRADI	N-acetyltransferase domain-containing protein. (254 aa)
	I1ID87_BRADI	Glucosamine 6-phosphate N-acetyltransferase. (164 aa)
	I1IDP2_BRADI	N-acetyltransferase domain-containing protein. (271 aa)
	I1IEQ4_BRADI	N-acetyltransferase domain-containing protein. (254 aa)
	I1IPI3_BRADI	Uncharacterized protein. (467 aa)
	I1IR89_BRADI	Glucosamine 6-phosphate N-acetyltransferase. (155 aa)
	I1IUH9_BRADI	N-acetyltransferase domain-containing protein. (586 aa)
	I1IYL6_BRADI	N-acetyltransferase domain-containing protein. (301 aa)
	I1IZ01_BRADI	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. (569 aa)
	I1J2B2_BRADI	N-acetyltransferase domain-containing protein. (194 aa)
	I1J3U0_BRADI	Uncharacterized protein. (1416 aa)
	A0A0Q3G6U2	N-acetyltransferase domain-containing protein. (203 aa)
	A0A0Q3GP04	N-acetyltransferase domain-containing protein. (370 aa)
	A0A0Q3GP18	N-acetyltransferase domain-containing protein. (183 aa)
	A0A0Q3GQP1	N-acetyltransferase domain-containing protein. (157 aa)
	A0A0Q3IAK2	N-acetyltransferase domain-containing protein. (215 aa)

Your Current Organism:

Brachypodium distachyon

NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0Q3G6U2	I1GPB2_BRADI	A0A0Q3G6U2	I1GPB2	N-acetyltransferase domain-containing protein.	N-acetyltransferase domain-containing protein.	0.679
A0A0Q3G6U2	I1HNM0_BRADI	A0A0Q3G6U2	I1HNM0	N-acetyltransferase domain-containing protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.433
A0A0Q3G6U2	I1HPA7_BRADI	A0A0Q3G6U2	I1HPA7	N-acetyltransferase domain-containing protein.	N-acetyltransferase domain-containing protein.	0.712
A0A0Q3G6U2	I1IEQ4_BRADI	A0A0Q3G6U2	I1IEQ4	N-acetyltransferase domain-containing protein.	N-acetyltransferase domain-containing protein.	0.554
A0A0Q3G6U2	I1J2B2_BRADI	A0A0Q3G6U2	I1J2B2	N-acetyltransferase domain-containing protein.	N-acetyltransferase domain-containing protein.	0.794
A0A0Q3IAK2	I1HNM0_BRADI	A0A0Q3IAK2	I1HNM0	N-acetyltransferase domain-containing protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.433
A0A0Q3IAK2	I1IEQ4_BRADI	A0A0Q3IAK2	I1IEQ4	N-acetyltransferase domain-containing protein.	N-acetyltransferase domain-containing protein.	0.554
A0A0Q3IAK2	I1J2B2_BRADI	A0A0Q3IAK2	I1J2B2	N-acetyltransferase domain-containing protein.	N-acetyltransferase domain-containing protein.	0.543
A0A0Q3NZI4	A0A0Q3PSP7	A0A0Q3NZI4	A0A0Q3PSP7	N-acetyltransferase domain-containing protein.	Glucosamine 6-phosphate N-acetyltransferase.	0.560
A0A0Q3NZI4	I1GPB2_BRADI	A0A0Q3NZI4	I1GPB2	N-acetyltransferase domain-containing protein.	N-acetyltransferase domain-containing protein.	0.549
A0A0Q3NZI4	I1H2B5_BRADI	A0A0Q3NZI4	I1H2B5	N-acetyltransferase domain-containing protein.	N-acetyltransferase domain-containing protein.	0.560
A0A0Q3NZI4	I1H9N2_BRADI	A0A0Q3NZI4	I1H9N2	N-acetyltransferase domain-containing protein.	N-acetyltransferase domain-containing protein.	0.485
A0A0Q3NZI4	I1HID3_BRADI	A0A0Q3NZI4	I1HID3	N-acetyltransferase domain-containing protein.	N-acetyltransferase domain-containing protein.	0.476
A0A0Q3NZI4	I1HNM0_BRADI	A0A0Q3NZI4	I1HNM0	N-acetyltransferase domain-containing protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.537
A0A0Q3NZI4	I1I090_BRADI	A0A0Q3NZI4	I1I090	N-acetyltransferase domain-containing protein.	N-acetyltransferase domain-containing protein.	0.559
A0A0Q3NZI4	I1I2D3_BRADI	A0A0Q3NZI4	I1I2D3	N-acetyltransferase domain-containing protein.	N-acetyltransferase domain-containing protein.	0.559
A0A0Q3NZI4	I1IDP2_BRADI	A0A0Q3NZI4	I1IDP2	N-acetyltransferase domain-containing protein.	N-acetyltransferase domain-containing protein.	0.560
A0A0Q3NZI4	I1IYL6_BRADI	A0A0Q3NZI4	I1IYL6	N-acetyltransferase domain-containing protein.	N-acetyltransferase domain-containing protein.	0.560
A0A0Q3NZI4	I1J2B2_BRADI	A0A0Q3NZI4	I1J2B2	N-acetyltransferase domain-containing protein.	N-acetyltransferase domain-containing protein.	0.495
A0A0Q3PSP7	A0A0Q3NZI4	A0A0Q3PSP7	A0A0Q3NZI4	Glucosamine 6-phosphate N-acetyltransferase.	N-acetyltransferase domain-containing protein.	0.560