(41 nodes) Isoprenoid synthase domain superfamily network (Brachypodium distachyon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0Q3I8H6	Uncharacterized protein. (513 aa)
	I1J2U5_BRADI	Uncharacterized protein; Belongs to the FPP/GGPP synthase family. (401 aa)
	I1J1P8_BRADI	Uncharacterized protein; Belongs to the terpene synthase family. (693 aa)
	I1J1N9_BRADI	Uncharacterized protein; Belongs to the terpene synthase family. (858 aa)
	I1IVS7_BRADI	Uncharacterized protein. (599 aa)
	I1IVS2_BRADI	Uncharacterized protein; Belongs to the terpene synthase family. (586 aa)
	I1ITA2_BRADI	Uncharacterized protein; Belongs to the FPP/GGPP synthase family. (410 aa)
	I1IG83_BRADI	Uncharacterized protein. (394 aa)
	I1ICG2_BRADI	Uncharacterized protein; Belongs to the FPP/GGPP synthase family. (346 aa)
	I1I0U4_BRADI	Uncharacterized protein. (558 aa)
	I1HWK8_BRADI	Uncharacterized protein. (549 aa)
	I1HQR4_BRADI	Uncharacterized protein; Belongs to the FPP/GGPP synthase family. (353 aa)
	I1HQM7_BRADI	Uncharacterized protein; Belongs to the FPP/GGPP synthase family. (347 aa)
	I1HGY9_BRADI	Uncharacterized protein; Belongs to the FPP/GGPP synthase family. (352 aa)
	I1HG10_BRADI	Uncharacterized protein; Belongs to the FPP/GGPP synthase family. (402 aa)
	I1HDW0_BRADI	Uncharacterized protein; Belongs to the FPP/GGPP synthase family. (383 aa)
	I1HDQ2_BRADI	Uncharacterized protein. (628 aa)
	I1H4I2_BRADI	Uncharacterized protein. (599 aa)
	I1H216_BRADI	Uncharacterized protein. (302 aa)
	I1GW38_BRADI	Uncharacterized protein; Belongs to the FPP/GGPP synthase family. (426 aa)
	I1GV47_BRADI	Uncharacterized protein. (440 aa)
	I1GT09_BRADI	Uncharacterized protein; Belongs to the FPP/GGPP synthase family. (356 aa)
	I1GLZ8_BRADI	Uncharacterized protein. (403 aa)
	I1GLZ2_BRADI	Uncharacterized protein. (402 aa)
	A0A2K2DQH3	Uncharacterized protein; Belongs to the terpene synthase family. (321 aa)
	A0A2K2DCH5	Uncharacterized protein. (172 aa)
	A0A2K2DBP4	Uncharacterized protein; Belongs to the terpene synthase family. (865 aa)
	A0A2K2CXE5	Uncharacterized protein. (527 aa)
	A0A2K2CII5	Uncharacterized protein; Belongs to the terpene synthase family. (608 aa)
	A0A2K2CIH2	Uncharacterized protein; Belongs to the terpene synthase family. (850 aa)
	A0A0Q3Q0Q3	Uncharacterized protein. (541 aa)
	A0A0Q3KWJ8	Uncharacterized protein; Belongs to the terpene synthase family. (732 aa)
	A0A0Q3IZ75	Uncharacterized protein. (392 aa)
	A0A0Q3ICP8	Uncharacterized protein. (580 aa)
	A0A0Q3I5V4	Uncharacterized protein. (579 aa)
	A0A0Q3HP76	Uncharacterized protein. (553 aa)
	A0A0Q3HGR7	Uncharacterized protein. (531 aa)
	A0A0Q3HDT4	Uncharacterized protein; Belongs to the terpene synthase family. (491 aa)
	A0A0Q3H0P8	Uncharacterized protein. (533 aa)
	A0A0Q3GNP8	Uncharacterized protein; Belongs to the FPP/GGPP synthase family. (322 aa)
	A0A0Q3EFC3	Uncharacterized protein. (597 aa)

Your Current Organism:

Brachypodium distachyon

NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0Q3GNP8	A0A0Q3I5V4	A0A0Q3GNP8	A0A0Q3I5V4	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein.	0.683
A0A0Q3GNP8	A0A0Q3IZ75	A0A0Q3GNP8	A0A0Q3IZ75	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein.	0.631
A0A0Q3GNP8	A0A2K2DBP4	A0A0Q3GNP8	A0A2K2DBP4	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein; Belongs to the terpene synthase family.	0.478
A0A0Q3GNP8	I1GLZ2_BRADI	A0A0Q3GNP8	I1GLZ2	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein.	0.782
A0A0Q3GNP8	I1GLZ8_BRADI	A0A0Q3GNP8	I1GLZ8	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein.	0.573
A0A0Q3GNP8	I1GT09_BRADI	A0A0Q3GNP8	I1GT09	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.902
A0A0Q3GNP8	I1GV47_BRADI	A0A0Q3GNP8	I1GV47	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein.	0.631
A0A0Q3GNP8	I1GW38_BRADI	A0A0Q3GNP8	I1GW38	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.900
A0A0Q3GNP8	I1H216_BRADI	A0A0Q3GNP8	I1H216	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein.	0.549
A0A0Q3GNP8	I1H4I2_BRADI	A0A0Q3GNP8	I1H4I2	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein.	0.683
A0A0Q3GNP8	I1HDQ2_BRADI	A0A0Q3GNP8	I1HDQ2	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein.	0.683
A0A0Q3GNP8	I1HDW0_BRADI	A0A0Q3GNP8	I1HDW0	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.902
A0A0Q3GNP8	I1HG10_BRADI	A0A0Q3GNP8	I1HG10	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.910
A0A0Q3GNP8	I1HGY9_BRADI	A0A0Q3GNP8	I1HGY9	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.971
A0A0Q3GNP8	I1HQM7_BRADI	A0A0Q3GNP8	I1HQM7	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.523
A0A0Q3GNP8	I1HQR4_BRADI	A0A0Q3GNP8	I1HQR4	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.971
A0A0Q3GNP8	I1HWK8_BRADI	A0A0Q3GNP8	I1HWK8	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein.	0.805
A0A0Q3GNP8	I1ICG2_BRADI	A0A0Q3GNP8	I1ICG2	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.907
A0A0Q3GNP8	I1IG83_BRADI	A0A0Q3GNP8	I1IG83	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein.	0.631
A0A0Q3GNP8	I1ITA2_BRADI	A0A0Q3GNP8	I1ITA2	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.910