STRINGSTRING
I1HWR8_BRADI I1HWR8_BRADI I1HXV4_BRADI I1HXV4_BRADI I1I1J6_BRADI I1I1J6_BRADI I1I1N0_BRADI I1I1N0_BRADI I1I9Y0_BRADI I1I9Y0_BRADI I1IAP4_BRADI I1IAP4_BRADI I1IB12_BRADI I1IB12_BRADI I1ICG3_BRADI I1ICG3_BRADI I1IRS8_BRADI I1IRS8_BRADI I1IX44_BRADI I1IX44_BRADI I1IY34_BRADI I1IY34_BRADI I1IYQ1_BRADI I1IYQ1_BRADI I1J0J9_BRADI I1J0J9_BRADI I1J2B4_BRADI I1J2B4_BRADI I1J0W2_BRADI I1J0W2_BRADI A0A0Q3FA95 A0A0Q3FA95 A0A0Q3HE79 A0A0Q3HE79 A0A0Q3NY79 A0A0Q3NY79 A0A0Q3S6F6 A0A0Q3S6F6 A0A2K2CRZ8 A0A2K2CRZ8 A0A2K2DMD6 A0A2K2DMD6 I1GQQ0_BRADI I1GQQ0_BRADI I1GSG1_BRADI I1GSG1_BRADI I1GVQ2_BRADI I1GVQ2_BRADI I1GW42_BRADI I1GW42_BRADI I1GZZ7_BRADI I1GZZ7_BRADI I1HBA4_BRADI I1HBA4_BRADI I1HE26_BRADI I1HE26_BRADI I1HFQ8_BRADI I1HFQ8_BRADI I1HJW2_BRADI I1HJW2_BRADI I1HTR1_BRADI I1HTR1_BRADI I1HVJ4_BRADI I1HVJ4_BRADI I1HW00_BRADI I1HW00_BRADI
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
I1HWR8_BRADISmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
I1HXV4_BRADISm domain-containing protein. (86 aa)
I1I1J6_BRADISm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
I1I1N0_BRADISmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
I1I9Y0_BRADISm domain-containing protein. (98 aa)
I1IAP4_BRADIU6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
I1IB12_BRADISmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
I1ICG3_BRADIMechanosensitive ion channel protein. (959 aa)
I1IRS8_BRADISmall nuclear ribonucleoprotein G. (81 aa)
I1IX44_BRADISm domain-containing protein. (97 aa)
I1IY34_BRADIU6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
I1IYQ1_BRADISmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
I1J0J9_BRADIMechanosensitive ion channel protein. (872 aa)
I1J2B4_BRADISm domain-containing protein. (100 aa)
I1J0W2_BRADIUncharacterized protein. (528 aa)
A0A0Q3FA95Sm domain-containing protein. (251 aa)
A0A0Q3HE79Uncharacterized protein. (445 aa)
A0A0Q3NY79Sm domain-containing protein. (99 aa)
A0A0Q3S6F6Small nuclear ribonucleoprotein-associated protein. (263 aa)
A0A2K2CRZ8Mechanosensitive ion channel protein. (709 aa)
A0A2K2DMD6Uncharacterized protein. (681 aa)
I1GQQ0_BRADIUncharacterized protein. (673 aa)
I1GSG1_BRADISmall nuclear ribonucleoprotein G. (80 aa)
I1GVQ2_BRADISm domain-containing protein. (86 aa)
I1GW42_BRADISm domain-containing protein. (123 aa)
I1GZZ7_BRADIMechanosensitive ion channel protein. (751 aa)
I1HBA4_BRADIUncharacterized protein. (668 aa)
I1HE26_BRADIU6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (142 aa)
I1HFQ8_BRADIU6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
I1HJW2_BRADIU6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (89 aa)
I1HTR1_BRADIU6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
I1HVJ4_BRADISmall nuclear ribonucleoprotein Sm D2. (106 aa)
I1HW00_BRADISmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (134 aa)
Your Current Organism:
Brachypodium distachyon
NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome
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