97 items (Brachypodium distachyon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1IP80_BRADI	WD_REPEATS_REGION domain-containing protein. (328 aa)
	I1IRS8_BRADI	Small nuclear ribonucleoprotein G. (81 aa)
	A0A0Q3RNH9	Uncharacterized protein. (554 aa)
	A0A2K2CI75	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (512 aa)
	A0A2K2CJA2	C3H1-type domain-containing protein. (785 aa)
	A0A2K2CJI0	Uncharacterized protein. (390 aa)
	A0A2K2CJJ7	Pre-mRNA cleavage factor Im 25 kDa subunit; Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing. (289 aa)
	A0A2K2CQJ7	RRM domain-containing protein. (226 aa)
	A0A2K2CT00	Uncharacterized protein. (226 aa)
	A0A2K2CV05	Uncharacterized protein. (1072 aa)
	A0A2K2CVW8	Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily. (522 aa)
	A0A2K2D6B7	Cleavage and polyadenylation specificity factor subunit 2. (739 aa)
	A0A2K2D9Q4	Uncharacterized protein. (70 aa)
	A0A2K2DKZ9	Uncharacterized protein. (99 aa)
	A0A2K2DSM1	WD_REPEATS_REGION domain-containing protein. (551 aa)
	I1GKQ1_BRADI	Uncharacterized protein. (690 aa)
	I1GM84_BRADI	DUF3700 domain-containing protein. (247 aa)
	I1GN67_BRADI	WD_REPEATS_REGION domain-containing protein. (428 aa)
	I1GNE5_BRADI	DUF3700 domain-containing protein. (253 aa)
	I1GNU2_BRADI	Fip1 domain-containing protein. (1280 aa)
	I1GR86_BRADI	Uncharacterized protein. (288 aa)
	I1GSG1_BRADI	Small nuclear ribonucleoprotein G. (80 aa)
	I1ISV7_BRADI	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (534 aa)
	I1IVC3_BRADI	RRM domain-containing protein. (285 aa)
	I1IVQ1_BRADI	Uncharacterized protein. (261 aa)
	I1IWJ8_BRADI	WD_REPEATS_REGION domain-containing protein. (443 aa)
	I1J040_BRADI	RRM domain-containing protein. (232 aa)
	I1J3E7_BRADI	DUF3700 domain-containing protein. (257 aa)
	I1HWR8_BRADI	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	I1HW00_BRADI	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (134 aa)
	I1HPP9_BRADI	X8 domain-containing protein. (329 aa)
	I1HNH1_BRADI	Uncharacterized protein. (428 aa)
	I1HNG8_BRADI	Uncharacterized protein. (428 aa)
	I1HMF7_BRADI	Uncharacterized protein. (335 aa)
	I1HLH5_BRADI	Uncharacterized protein. (310 aa)
	I1HLB5_BRADI	Uncharacterized protein. (481 aa)
	I1HK66_BRADI	Uncharacterized protein. (373 aa)
	I1HEZ4_BRADI	Uncharacterized protein. (262 aa)
	I1HB27_BRADI	Uncharacterized protein. (319 aa)
	I1HAN8_BRADI	NAB domain-containing protein. (364 aa)
	I1HAN7_BRADI	Uncharacterized protein. (630 aa)
	I1HAJ1_BRADI	Uncharacterized protein. (286 aa)
	I1H719_BRADI	PWI domain-containing protein. (844 aa)
	I1H6W6_BRADI	RRM domain-containing protein. (272 aa)
	I1H6R4_BRADI	Tho1_MOS11_C domain-containing protein. (177 aa)
	I1H649_BRADI	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (537 aa)
	I1H5L5_BRADI	Uncharacterized protein. (289 aa)
	I1H5J0_BRADI	MIF4G domain-containing protein. (865 aa)
	I1H4S2_BRADI	WD_REPEATS_REGION domain-containing protein. (569 aa)
	I1H077_BRADI	Uncharacterized protein. (185 aa)
	I1GZQ5_BRADI	RRM domain-containing protein. (209 aa)
	I1GZ84_BRADI	RRM domain-containing protein. (311 aa)
	I1GY07_BRADI	Uncharacterized protein. (755 aa)
	I1GWL0_BRADI	RRM domain-containing protein. (222 aa)
	I1GVQ2_BRADI	Sm domain-containing protein. (86 aa)
	I1GU40_BRADI	Uncharacterized protein. (1258 aa)
	I1GTK5_BRADI	RRM domain-containing protein. (230 aa)
	I1GTK3_BRADI	RRM domain-containing protein. (233 aa)
	I1GSP4_BRADI	Uncharacterized protein. (344 aa)
	A0A0Q3EIL3	TPR_REGION domain-containing protein. (780 aa)
	A0A0Q3ESF0	RRM domain-containing protein. (478 aa)
	A0A0Q3EUM8	WD_REPEATS_REGION domain-containing protein. (396 aa)
	A0A0Q3EYM6	Cleavage and polyadenylation specificity factor subunit 2. (739 aa)
	A0A0Q3F045	Uncharacterized protein. (277 aa)
	A0A0Q3FZ90	X8 domain-containing protein. (253 aa)
	A0A0Q3G5R3	Uncharacterized protein. (176 aa)
	A0A0Q3GAC3	Uncharacterized protein. (429 aa)
	A0A0Q3GLS3	Uncharacterized protein. (768 aa)
	A0A0Q3GTF0	Uncharacterized protein. (535 aa)
	A0A0Q3GZ77	Uncharacterized protein. (1777 aa)
	A0A0Q3HCL6	RRM domain-containing protein. (267 aa)
	A0A0Q3HFT0	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (543 aa)
	A0A0Q3HTD1	CID domain-containing protein. (1029 aa)
	A0A0Q3MH89	Uncharacterized protein. (199 aa)
	A0A0Q3NCU9	Uncharacterized protein. (453 aa)
	A0A0Q3NY79	Sm domain-containing protein. (99 aa)
	A0A0Q3QJK7	Uncharacterized protein. (795 aa)
	A0A0Q3RDC7	Uncharacterized protein. (1783 aa)
	I1HXV4_BRADI	Sm domain-containing protein. (86 aa)
	I1HX89_BRADI	Uncharacterized protein. (761 aa)
	I1HYY4_BRADI	Uncharacterized protein. (696 aa)
	I1I0C2_BRADI	Uncharacterized protein. (164 aa)
	I1I0N2_BRADI	Slu7 domain-containing protein. (535 aa)
	I1I116_BRADI	CID domain-containing protein. (936 aa)
	I1I1D6_BRADI	Uncharacterized protein. (242 aa)
	I1I1N0_BRADI	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	I1I6E4_BRADI	RRM domain-containing protein. (204 aa)
	I1I772_BRADI	RRM domain-containing protein. (270 aa)
	I1IA40_BRADI	Uncharacterized protein. (86 aa)
	I1IA98_BRADI	Uncharacterized protein. (628 aa)
	I1IBG7_BRADI	Uncharacterized protein. (234 aa)
	I1IBI1_BRADI	Nuclear cap-binding protein subunit 2. (240 aa)
	I1IDC3_BRADI	Uncharacterized protein. (194 aa)
	I1IF08_BRADI	RRM domain-containing protein. (210 aa)
	I1IFR6_BRADI	Uncharacterized protein. (685 aa)
	I1IK06_BRADI	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (576 aa)
	I1INL4_BRADI	Uncharacterized protein. (242 aa)

Your Current Organism:

Brachypodium distachyon

NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0Q3EIL3	A0A0Q3ESF0	A0A0Q3EIL3	A0A0Q3ESF0	TPR_REGION domain-containing protein.	RRM domain-containing protein.	0.987
A0A0Q3EIL3	A0A0Q3EYM6	A0A0Q3EIL3	A0A0Q3EYM6	TPR_REGION domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.937
A0A0Q3EIL3	A0A0Q3F045	A0A0Q3EIL3	A0A0Q3F045	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.609
A0A0Q3EIL3	A0A0Q3G5R3	A0A0Q3EIL3	A0A0Q3G5R3	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.614
A0A0Q3EIL3	A0A0Q3GAC3	A0A0Q3EIL3	A0A0Q3GAC3	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.611
A0A0Q3EIL3	A0A0Q3GLS3	A0A0Q3EIL3	A0A0Q3GLS3	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.941
A0A0Q3EIL3	A0A0Q3GTF0	A0A0Q3EIL3	A0A0Q3GTF0	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.899
A0A0Q3EIL3	A0A0Q3HCL6	A0A0Q3EIL3	A0A0Q3HCL6	TPR_REGION domain-containing protein.	RRM domain-containing protein.	0.578
A0A0Q3EIL3	A0A0Q3HTD1	A0A0Q3EIL3	A0A0Q3HTD1	TPR_REGION domain-containing protein.	CID domain-containing protein.	0.984
A0A0Q3EIL3	A0A0Q3RNH9	A0A0Q3EIL3	A0A0Q3RNH9	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.899
A0A0Q3EIL3	A0A2K2CI75	A0A0Q3EIL3	A0A2K2CI75	TPR_REGION domain-containing protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.899
A0A0Q3EIL3	A0A2K2CJI0	A0A0Q3EIL3	A0A2K2CJI0	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.857
A0A0Q3EIL3	A0A2K2CJJ7	A0A0Q3EIL3	A0A2K2CJJ7	TPR_REGION domain-containing protein.	Pre-mRNA cleavage factor Im 25 kDa subunit; Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing.	0.857
A0A0Q3EIL3	A0A2K2CQJ7	A0A0Q3EIL3	A0A2K2CQJ7	TPR_REGION domain-containing protein.	RRM domain-containing protein.	0.578
A0A0Q3EIL3	A0A2K2CVW8	A0A0Q3EIL3	A0A2K2CVW8	TPR_REGION domain-containing protein.	Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily.	0.976
A0A0Q3EIL3	A0A2K2D6B7	A0A0Q3EIL3	A0A2K2D6B7	TPR_REGION domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.937
A0A0Q3EIL3	A0A2K2DKZ9	A0A0Q3EIL3	A0A2K2DKZ9	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.939
A0A0Q3EIL3	I1GKQ1_BRADI	A0A0Q3EIL3	I1GKQ1	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.941
A0A0Q3EIL3	I1GN67_BRADI	A0A0Q3EIL3	I1GN67	TPR_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.994
A0A0Q3EIL3	I1GNU2_BRADI	A0A0Q3EIL3	I1GNU2	TPR_REGION domain-containing protein.	Fip1 domain-containing protein.	0.994