21 items (Brachypodium distachyon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0Q3J3Z2	RING-type domain-containing protein. (390 aa)
	A0A0Q3MY08	Uncharacterized protein. (259 aa)
	A0A0Q3PFJ2	Enhancer of polycomb-like protein. (827 aa)
	I1IP43_BRADI	Enhancer of polycomb-like protein. (466 aa)
	I1IGS5_BRADI	RING-type domain-containing protein. (479 aa)
	I1I4A4_BRADI	Uncharacterized protein; Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. Belongs to the E2F/DP family. (348 aa)
	I1I3B4_BRADI	Enhancer of polycomb-like protein. (443 aa)
	I1I1R5_BRADI	WD_REPEATS_REGION domain-containing protein. (380 aa)
	I1I0S4_BRADI	WD_REPEATS_REGION domain-containing protein. (379 aa)
	I1HWY0_BRADI	VEFS-Box domain-containing protein. (648 aa)
	I1HVX7_BRADI	Enhancer of polycomb-like protein. (788 aa)
	I1HI17_BRADI	RING-type domain-containing protein. (495 aa)
	I1H3I7_BRADI	Uncharacterized protein. (149 aa)
	A0A2K2D7G1	WD_REPEATS_REGION domain-containing protein. (358 aa)
	I1GQ66_BRADI	RING-type domain-containing protein. (502 aa)
	I1GNH0_BRADI	RING-type domain-containing protein. (449 aa)
	A0A2K2DIP5	Uncharacterized protein. (305 aa)
	A0A0Q3IML7	VEFS-Box domain-containing protein. (701 aa)
	A0A0Q3GIG5	RING-type domain-containing protein. (486 aa)
	A0A0Q3HKX5	Uncharacterized protein; Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. Belongs to the E2F/DP family. (384 aa)
	A0A0Q3I349	WD_REPEATS_REGION domain-containing protein. (396 aa)

Your Current Organism:

Brachypodium distachyon

NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0Q3GIG5	A0A0Q3HKX5	A0A0Q3GIG5	A0A0Q3HKX5	RING-type domain-containing protein.	Uncharacterized protein; Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. Belongs to the E2F/DP family.	0.543
A0A0Q3GIG5	A0A0Q3I349	A0A0Q3GIG5	A0A0Q3I349	RING-type domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.676
A0A0Q3GIG5	A0A0Q3IML7	A0A0Q3GIG5	A0A0Q3IML7	RING-type domain-containing protein.	VEFS-Box domain-containing protein.	0.712
A0A0Q3GIG5	A0A0Q3J3Z2	A0A0Q3GIG5	A0A0Q3J3Z2	RING-type domain-containing protein.	RING-type domain-containing protein.	0.879
A0A0Q3GIG5	A0A0Q3MY08	A0A0Q3GIG5	A0A0Q3MY08	RING-type domain-containing protein.	Uncharacterized protein.	0.543
A0A0Q3GIG5	A0A2K2D7G1	A0A0Q3GIG5	A0A2K2D7G1	RING-type domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.676
A0A0Q3GIG5	A0A2K2DIP5	A0A0Q3GIG5	A0A2K2DIP5	RING-type domain-containing protein.	Uncharacterized protein.	0.879
A0A0Q3GIG5	I1GNH0_BRADI	A0A0Q3GIG5	I1GNH0	RING-type domain-containing protein.	RING-type domain-containing protein.	0.889
A0A0Q3GIG5	I1GQ66_BRADI	A0A0Q3GIG5	I1GQ66	RING-type domain-containing protein.	RING-type domain-containing protein.	0.879
A0A0Q3GIG5	I1HWY0_BRADI	A0A0Q3GIG5	I1HWY0	RING-type domain-containing protein.	VEFS-Box domain-containing protein.	0.712
A0A0Q3GIG5	I1I0S4_BRADI	A0A0Q3GIG5	I1I0S4	RING-type domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.676
A0A0Q3GIG5	I1I1R5_BRADI	A0A0Q3GIG5	I1I1R5	RING-type domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.676
A0A0Q3GIG5	I1I4A4_BRADI	A0A0Q3GIG5	I1I4A4	RING-type domain-containing protein.	Uncharacterized protein; Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. Belongs to the E2F/DP family.	0.543
A0A0Q3GIG5	I1IGS5_BRADI	A0A0Q3GIG5	I1IGS5	RING-type domain-containing protein.	RING-type domain-containing protein.	0.879
A0A0Q3HKX5	A0A0Q3GIG5	A0A0Q3HKX5	A0A0Q3GIG5	Uncharacterized protein; Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. Belongs to the E2F/DP family.	RING-type domain-containing protein.	0.543
A0A0Q3HKX5	A0A0Q3J3Z2	A0A0Q3HKX5	A0A0Q3J3Z2	Uncharacterized protein; Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. Belongs to the E2F/DP family.	RING-type domain-containing protein.	0.537
A0A0Q3HKX5	A0A0Q3PFJ2	A0A0Q3HKX5	A0A0Q3PFJ2	Uncharacterized protein; Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. Belongs to the E2F/DP family.	Enhancer of polycomb-like protein.	0.506
A0A0Q3HKX5	A0A2K2DIP5	A0A0Q3HKX5	A0A2K2DIP5	Uncharacterized protein; Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. Belongs to the E2F/DP family.	Uncharacterized protein.	0.537
A0A0Q3HKX5	I1GNH0_BRADI	A0A0Q3HKX5	I1GNH0	Uncharacterized protein; Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. Belongs to the E2F/DP family.	RING-type domain-containing protein.	0.537
A0A0Q3HKX5	I1GQ66_BRADI	A0A0Q3HKX5	I1GQ66	Uncharacterized protein; Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. Belongs to the E2F/DP family.	RING-type domain-containing protein.	0.537