(10 nodes) GHMP kinases N terminal domain network (Brachypodium distachyon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1HAJ5_BRADI	Uncharacterized protein. (1068 aa)
	I1H7D5_BRADI	Uncharacterized protein. (512 aa)
	I1GL87_BRADI	Uncharacterized protein. (500 aa)
	A0A2K2D8C8	Mevalonate kinase. (413 aa)
	A0A0Q3HYI8	Uncharacterized protein. (985 aa)
	A0A0Q3H3G3	Uncharacterized protein. (995 aa)
	I1IFS6_BRADI	Uncharacterized protein. (380 aa)
	I1HVJ7_BRADI	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family. (417 aa)
	I1HWI1_BRADI	Uncharacterized protein. (355 aa)
	I1HSJ9_BRADI	GHMP_kinases_N domain-containing protein. (406 aa)

Your Current Organism:

Brachypodium distachyon

NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0Q3H3G3	A0A0Q3HYI8	A0A0Q3H3G3	A0A0Q3HYI8	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A0Q3H3G3	I1HWI1_BRADI	A0A0Q3H3G3	I1HWI1	Uncharacterized protein.	Uncharacterized protein.	0.835
A0A0Q3HYI8	A0A0Q3H3G3	A0A0Q3HYI8	A0A0Q3H3G3	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A0Q3HYI8	I1HWI1_BRADI	A0A0Q3HYI8	I1HWI1	Uncharacterized protein.	Uncharacterized protein.	0.835
A0A2K2D8C8	I1H7D5_BRADI	A0A2K2D8C8	I1H7D5	Mevalonate kinase.	Uncharacterized protein.	0.984
A0A2K2D8C8	I1HSJ9_BRADI	A0A2K2D8C8	I1HSJ9	Mevalonate kinase.	GHMP_kinases_N domain-containing protein.	0.565
A0A2K2D8C8	I1HVJ7_BRADI	A0A2K2D8C8	I1HVJ7	Mevalonate kinase.	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.	0.978
A0A2K2D8C8	I1IFS6_BRADI	A0A2K2D8C8	I1IFS6	Mevalonate kinase.	Uncharacterized protein.	0.566
I1H7D5_BRADI	A0A2K2D8C8	I1H7D5	A0A2K2D8C8	Uncharacterized protein.	Mevalonate kinase.	0.984
I1H7D5_BRADI	I1HSJ9_BRADI	I1H7D5	I1HSJ9	Uncharacterized protein.	GHMP_kinases_N domain-containing protein.	0.564
I1H7D5_BRADI	I1HVJ7_BRADI	I1H7D5	I1HVJ7	Uncharacterized protein.	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.	0.992
I1H7D5_BRADI	I1IFS6_BRADI	I1H7D5	I1IFS6	Uncharacterized protein.	Uncharacterized protein.	0.539
I1HSJ9_BRADI	A0A2K2D8C8	I1HSJ9	A0A2K2D8C8	GHMP_kinases_N domain-containing protein.	Mevalonate kinase.	0.565
I1HSJ9_BRADI	I1H7D5_BRADI	I1HSJ9	I1H7D5	GHMP_kinases_N domain-containing protein.	Uncharacterized protein.	0.564
I1HSJ9_BRADI	I1HVJ7_BRADI	I1HSJ9	I1HVJ7	GHMP_kinases_N domain-containing protein.	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.	0.499
I1HSJ9_BRADI	I1IFS6_BRADI	I1HSJ9	I1IFS6	GHMP_kinases_N domain-containing protein.	Uncharacterized protein.	0.409
I1HVJ7_BRADI	A0A2K2D8C8	I1HVJ7	A0A2K2D8C8	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.	Mevalonate kinase.	0.978
I1HVJ7_BRADI	I1H7D5_BRADI	I1HVJ7	I1H7D5	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.	Uncharacterized protein.	0.992
I1HVJ7_BRADI	I1HSJ9_BRADI	I1HVJ7	I1HSJ9	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.	GHMP_kinases_N domain-containing protein.	0.499
I1HWI1_BRADI	A0A0Q3H3G3	I1HWI1	A0A0Q3H3G3	Uncharacterized protein.	Uncharacterized protein.	0.835