(6 nodes) Squalene/phytoene synthase network (Brachypodium distachyon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1GLZ8_BRADI	Uncharacterized protein. (403 aa)
	I1IG83_BRADI	Uncharacterized protein. (394 aa)
	I1H216_BRADI	Uncharacterized protein. (302 aa)
	I1GV47_BRADI	Uncharacterized protein. (440 aa)
	I1GLZ2_BRADI	Uncharacterized protein. (402 aa)
	A0A0Q3IZ75	Uncharacterized protein. (392 aa)

Your Current Organism:

Brachypodium distachyon

NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0Q3IZ75	I1GV47_BRADI	A0A0Q3IZ75	I1GV47	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A0Q3IZ75	I1H216_BRADI	A0A0Q3IZ75	I1H216	Uncharacterized protein.	Uncharacterized protein.	0.510
A0A0Q3IZ75	I1IG83_BRADI	A0A0Q3IZ75	I1IG83	Uncharacterized protein.	Uncharacterized protein.	0.902
I1GLZ2_BRADI	I1GLZ8_BRADI	I1GLZ2	I1GLZ8	Uncharacterized protein.	Uncharacterized protein.	0.901
I1GLZ2_BRADI	I1GV47_BRADI	I1GLZ2	I1GV47	Uncharacterized protein.	Uncharacterized protein.	0.638
I1GLZ2_BRADI	I1IG83_BRADI	I1GLZ2	I1IG83	Uncharacterized protein.	Uncharacterized protein.	0.638
I1GLZ8_BRADI	I1GLZ2_BRADI	I1GLZ8	I1GLZ2	Uncharacterized protein.	Uncharacterized protein.	0.901
I1GV47_BRADI	A0A0Q3IZ75	I1GV47	A0A0Q3IZ75	Uncharacterized protein.	Uncharacterized protein.	0.901
I1GV47_BRADI	I1GLZ2_BRADI	I1GV47	I1GLZ2	Uncharacterized protein.	Uncharacterized protein.	0.638
I1GV47_BRADI	I1H216_BRADI	I1GV47	I1H216	Uncharacterized protein.	Uncharacterized protein.	0.659
I1GV47_BRADI	I1IG83_BRADI	I1GV47	I1IG83	Uncharacterized protein.	Uncharacterized protein.	0.903
I1H216_BRADI	A0A0Q3IZ75	I1H216	A0A0Q3IZ75	Uncharacterized protein.	Uncharacterized protein.	0.510
I1H216_BRADI	I1GV47_BRADI	I1H216	I1GV47	Uncharacterized protein.	Uncharacterized protein.	0.659
I1H216_BRADI	I1IG83_BRADI	I1H216	I1IG83	Uncharacterized protein.	Uncharacterized protein.	0.451
I1IG83_BRADI	A0A0Q3IZ75	I1IG83	A0A0Q3IZ75	Uncharacterized protein.	Uncharacterized protein.	0.902
I1IG83_BRADI	I1GLZ2_BRADI	I1IG83	I1GLZ2	Uncharacterized protein.	Uncharacterized protein.	0.638
I1IG83_BRADI	I1GV47_BRADI	I1IG83	I1GV47	Uncharacterized protein.	Uncharacterized protein.	0.903
I1IG83_BRADI	I1H216_BRADI	I1IG83	I1H216	Uncharacterized protein.	Uncharacterized protein.	0.451