12 items (Brachypodium distachyon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1GN19_BRADI	Uncharacterized protein. (93 aa)
	I1IQ46_BRADI	Uncharacterized protein. (109 aa)
	I1IFN2_BRADI	Uncharacterized protein. (110 aa)
	I1HJ39_BRADI	Uncharacterized protein. (94 aa)
	I1GV36_BRADI	Uncharacterized protein. (124 aa)
	I1GN18_BRADI	Uncharacterized protein. (93 aa)
	A0A2K2DP63	Uncharacterized protein. (164 aa)
	A0A2K2CYM3	Uncharacterized protein. (103 aa)
	A0A0Q3NBM1	Uncharacterized protein. (108 aa)
	A0A0Q3ICS3	Uncharacterized protein. (95 aa)
	A0A0Q3GWS0	Uncharacterized protein. (98 aa)
	A0A0Q3E5M9	Uncharacterized protein. (107 aa)

Your Current Organism:

Brachypodium distachyon

NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0Q3E5M9	A0A0Q3GWS0	A0A0Q3E5M9	A0A0Q3GWS0	Uncharacterized protein.	Uncharacterized protein.	0.471
A0A0Q3E5M9	A0A0Q3NBM1	A0A0Q3E5M9	A0A0Q3NBM1	Uncharacterized protein.	Uncharacterized protein.	0.533
A0A0Q3E5M9	I1GN18_BRADI	A0A0Q3E5M9	I1GN18	Uncharacterized protein.	Uncharacterized protein.	0.521
A0A0Q3E5M9	I1GV36_BRADI	A0A0Q3E5M9	I1GV36	Uncharacterized protein.	Uncharacterized protein.	0.479
A0A0Q3GWS0	A0A0Q3E5M9	A0A0Q3GWS0	A0A0Q3E5M9	Uncharacterized protein.	Uncharacterized protein.	0.471
A0A0Q3GWS0	A0A0Q3ICS3	A0A0Q3GWS0	A0A0Q3ICS3	Uncharacterized protein.	Uncharacterized protein.	0.515
A0A0Q3GWS0	I1GV36_BRADI	A0A0Q3GWS0	I1GV36	Uncharacterized protein.	Uncharacterized protein.	0.517
A0A0Q3GWS0	I1HJ39_BRADI	A0A0Q3GWS0	I1HJ39	Uncharacterized protein.	Uncharacterized protein.	0.515
A0A0Q3GWS0	I1IQ46_BRADI	A0A0Q3GWS0	I1IQ46	Uncharacterized protein.	Uncharacterized protein.	0.502
A0A0Q3ICS3	A0A0Q3GWS0	A0A0Q3ICS3	A0A0Q3GWS0	Uncharacterized protein.	Uncharacterized protein.	0.515
A0A0Q3ICS3	A0A0Q3NBM1	A0A0Q3ICS3	A0A0Q3NBM1	Uncharacterized protein.	Uncharacterized protein.	0.529
A0A0Q3ICS3	A0A2K2DP63	A0A0Q3ICS3	A0A2K2DP63	Uncharacterized protein.	Uncharacterized protein.	0.509
A0A0Q3ICS3	I1GN18_BRADI	A0A0Q3ICS3	I1GN18	Uncharacterized protein.	Uncharacterized protein.	0.518
A0A0Q3ICS3	I1GN19_BRADI	A0A0Q3ICS3	I1GN19	Uncharacterized protein.	Uncharacterized protein.	0.516
A0A0Q3ICS3	I1IQ46_BRADI	A0A0Q3ICS3	I1IQ46	Uncharacterized protein.	Uncharacterized protein.	0.518
A0A0Q3NBM1	A0A0Q3E5M9	A0A0Q3NBM1	A0A0Q3E5M9	Uncharacterized protein.	Uncharacterized protein.	0.533
A0A0Q3NBM1	A0A0Q3ICS3	A0A0Q3NBM1	A0A0Q3ICS3	Uncharacterized protein.	Uncharacterized protein.	0.529
A0A0Q3NBM1	A0A2K2DP63	A0A0Q3NBM1	A0A2K2DP63	Uncharacterized protein.	Uncharacterized protein.	0.506
A0A0Q3NBM1	I1GV36_BRADI	A0A0Q3NBM1	I1GV36	Uncharacterized protein.	Uncharacterized protein.	0.517
A0A0Q3NBM1	I1IQ46_BRADI	A0A0Q3NBM1	I1IQ46	Uncharacterized protein.	Uncharacterized protein.	0.506