(30 nodes) NmrA-like family network (Brachypodium distachyon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1I2J1_BRADI	Epimerase domain-containing protein. (345 aa)
	A0A0Q3FVQ0	NmrA domain-containing protein. (314 aa)
	A0A0Q3FVT3	NmrA domain-containing protein. (205 aa)
	A0A0Q3JYD5	NmrA domain-containing protein. (264 aa)
	A0A0Q3L341	Epimerase domain-containing protein. (357 aa)
	A0A0Q3PQE6	NmrA domain-containing protein. (299 aa)
	A0A2K2D566	Epimerase domain-containing protein. (330 aa)
	A0A2K2DKJ8	Epimerase domain-containing protein. (329 aa)
	A0A2K2DMF9	Epimerase domain-containing protein. (440 aa)
	I1GSM3_BRADI	Epimerase domain-containing protein. (338 aa)
	I1GSM4_BRADI	Epimerase domain-containing protein. (335 aa)
	I1GVL7_BRADI	Epimerase domain-containing protein. (356 aa)
	I1H4Q4_BRADI	Reticulon-like protein. (560 aa)
	I1H5G6_BRADI	NAD(P)-bd_dom domain-containing protein. (403 aa)
	I1H8X3_BRADI	Epimerase domain-containing protein. (332 aa)
	I1HFI0_BRADI	Uncharacterized protein. (289 aa)
	I1HFI1_BRADI	Epimerase domain-containing protein. (329 aa)
	I1HFI3_BRADI	Epimerase domain-containing protein. (329 aa)
	I1J271_BRADI	Epimerase domain-containing protein. (339 aa)
	I1J269_BRADI	Epimerase domain-containing protein. (345 aa)
	I1J267_BRADI	Epimerase domain-containing protein. (344 aa)
	I1J1Z7_BRADI	NAD(P)-bd_dom domain-containing protein. (289 aa)
	I1ITA8_BRADI	NmrA domain-containing protein. (307 aa)
	I1IIU2_BRADI	NAD(P)-bd_dom domain-containing protein. (295 aa)
	I1IHR7_BRADI	NmrA domain-containing protein. (314 aa)
	I1IDW6_BRADI	NAD(P)-bd_dom domain-containing protein. (412 aa)
	I1IDR7_BRADI	Epimerase domain-containing protein. (347 aa)
	I1I9C8_BRADI	NmrA domain-containing protein. (389 aa)
	I1I6G4_BRADI	NAD(P)-bd_dom domain-containing protein. (309 aa)
	I1HZ33_BRADI	Uncharacterized protein. (593 aa)

Your Current Organism:

Brachypodium distachyon

NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1J267_BRADI	I1J269_BRADI	I1J267	I1J269	Epimerase domain-containing protein.	Epimerase domain-containing protein.	0.901
I1J267_BRADI	I1J271_BRADI	I1J267	I1J271	Epimerase domain-containing protein.	Epimerase domain-containing protein.	0.901
I1J269_BRADI	I1J267_BRADI	I1J269	I1J267	Epimerase domain-containing protein.	Epimerase domain-containing protein.	0.901
I1J269_BRADI	I1J271_BRADI	I1J269	I1J271	Epimerase domain-containing protein.	Epimerase domain-containing protein.	0.901
I1J271_BRADI	I1J267_BRADI	I1J271	I1J267	Epimerase domain-containing protein.	Epimerase domain-containing protein.	0.901
I1J271_BRADI	I1J269_BRADI	I1J271	I1J269	Epimerase domain-containing protein.	Epimerase domain-containing protein.	0.901