(11 nodes) Mixed, incl. Coenzyme F420 binding, and Virulence factor BrkB network (Sphingobacterium sp. ML3W)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIM36207.1	Ribonuclease BN; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	AIM36209.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (166 aa)
	AIM36765.1	GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (93 aa)
	AIM37116.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (155 aa)
	AIM37117.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
	AIM37118.1	Dimethylallyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
	AIM37119.1	Ribonuclease BN; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	AIM37151.1	General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family. (62 aa)
	AIM37210.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
	AIM37752.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	AIM38023.1	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)

Your Current Organism:

Sphingobacterium sp. ML3W

NCBI taxonomy Id: 1538644
Other names: S. sp. ML3W

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIM36207.1	AIM36209.1	KO02_05485	KO02_05495	Ribonuclease BN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
AIM36209.1	AIM36207.1	KO02_05495	KO02_05485	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribonuclease BN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
AIM36765.1	AIM37117.1	KO02_08690	KO02_10765	GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.584
AIM36765.1	AIM37151.1	KO02_08690	KO02_10965	GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.	0.651
AIM36765.1	AIM37210.1	KO02_08690	KO02_11290	GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
AIM36765.1	AIM37752.1	KO02_08690	KO02_14525	GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.657
AIM37116.1	AIM37117.1	KO02_10760	KO02_10765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
AIM37117.1	AIM36765.1	KO02_10765	KO02_08690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.584
AIM37117.1	AIM37116.1	KO02_10765	KO02_10760	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.705
AIM37117.1	AIM37119.1	KO02_10765	KO02_10775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribonuclease BN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
AIM37117.1	AIM37151.1	KO02_10765	KO02_10965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.	0.705
AIM37117.1	AIM37752.1	KO02_10765	KO02_14525	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.679
AIM37118.1	AIM37119.1	KO02_10770	KO02_10775	Dimethylallyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribonuclease BN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
AIM37118.1	AIM38023.1	KO02_10770	KO02_16005	Dimethylallyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.602
AIM37119.1	AIM37117.1	KO02_10775	KO02_10765	Ribonuclease BN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
AIM37119.1	AIM37118.1	KO02_10775	KO02_10770	Ribonuclease BN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dimethylallyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
AIM37119.1	AIM37151.1	KO02_10775	KO02_10965	Ribonuclease BN; Derived by automated computational analysis using gene prediction method: Protein Homology.	General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.	0.409
AIM37119.1	AIM37210.1	KO02_10775	KO02_11290	Ribonuclease BN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
AIM37151.1	AIM36765.1	KO02_10965	KO02_08690	General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.	GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.651
AIM37151.1	AIM37117.1	KO02_10965	KO02_10765	General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705