(37 nodes) Mixed, incl. Phenol-containing compound metabolic process, and Short-chain dehydrogenase/reductase SDR network (Sphingobacterium sp. ML3W)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIM35350.1	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
	AIM35370.1	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa)
	AIM36607.1	Ureidoglycolate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	AIM36804.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (514 aa)
	AIM36868.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (79 aa)
	AIM36961.1	Sulfate permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (510 aa)
	AIM36962.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)
	AIM37027.1	Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)
	AIM37028.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
	AIM37127.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (68 aa)
	AIM37128.1	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	AIM37161.1	L-fucose mutarotase; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)
	AIM37163.1	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
	AIM37164.1	Ureidoglycolate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	AIM37165.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	AIM37166.1	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
	AIM37221.1	3-alpha-hydroxysteroid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	AIM37713.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	AIM38160.1	4-hydroxyphenylpyruvate dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)
	AIM38161.1	Homogentisate 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)
	AIM38162.1	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	AIM38163.1	Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
	AIM38167.1	Phenylalanine 4-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (588 aa)
	AIM38524.1	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
	AIM38525.1	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology. (517 aa)
	AIM38526.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (75 aa)
	AIM38529.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (125 aa)
	AIM38530.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	AIM38531.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (557 aa)
	rlmF	23S rRNA methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA. (303 aa)
	AIM38802.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
	AIM38803.1	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
	AIM38804.1	Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology. (573 aa)
	AIM38805.1	Thiol peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)
	AIM38856.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (89 aa)
	AIM38857.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (512 aa)
	AIM38858.1	Carbonate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)

Your Current Organism:

Sphingobacterium sp. ML3W

NCBI taxonomy Id: 1538644
Other names: S. sp. ML3W

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIM35350.1	AIM37128.1	KO02_00745	KO02_10825	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.600
AIM35350.1	AIM37163.1	KO02_00745	KO02_11040	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
AIM35350.1	AIM37221.1	KO02_00745	KO02_11345	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-alpha-hydroxysteroid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.852
AIM35370.1	AIM38858.1	KO02_00850	KO02_20735	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbonate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.881
AIM36607.1	AIM37163.1	KO02_07735	KO02_11040	Ureidoglycolate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
AIM36607.1	AIM37164.1	KO02_07735	KO02_11045	Ureidoglycolate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ureidoglycolate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AIM36607.1	AIM38161.1	KO02_07735	KO02_16855	Ureidoglycolate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Homogentisate 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.671
AIM36804.1	AIM38858.1	KO02_08890	KO02_20735	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbonate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.719
AIM36868.1	AIM38526.1	KO02_09285	KO02_18865	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.453
AIM36868.1	rlmF	KO02_09285	KO02_19145	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	23S rRNA methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA.	0.571
AIM37027.1	AIM37028.1	KO02_10220	KO02_10225	Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.534
AIM37028.1	AIM37027.1	KO02_10225	KO02_10220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.534
AIM37127.1	AIM37128.1	KO02_10820	KO02_10825	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
AIM37128.1	AIM35350.1	KO02_10825	KO02_00745	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.600
AIM37128.1	AIM37127.1	KO02_10825	KO02_10820	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.463
AIM37161.1	AIM37163.1	KO02_11030	KO02_11040	L-fucose mutarotase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
AIM37161.1	AIM37164.1	KO02_11030	KO02_11045	L-fucose mutarotase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ureidoglycolate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
AIM37161.1	AIM37165.1	KO02_11030	KO02_11050	L-fucose mutarotase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
AIM37161.1	AIM37166.1	KO02_11030	KO02_11055	L-fucose mutarotase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910
AIM37163.1	AIM35350.1	KO02_11040	KO02_00745	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783