(27 nodes) Starch-binding associating with outer membrane, and TonB-dependent outer membrane protein SusC/RagA, conserved site network (Sphingobacterium sp. ML3W)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIM35981.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (990 aa)
	AIM35982.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (520 aa)
	AIM36096.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1002 aa)
	AIM36097.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (454 aa)
	AIM36424.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (996 aa)
	AIM36425.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (542 aa)
	AIM36739.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (434 aa)
	AIM36743.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1003 aa)
	AIM36744.1	Starch-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (539 aa)
	AIM36745.1	Carbohydrate-binding protein SusC; Derived by automated computational analysis using gene prediction method: Protein Homology. (1099 aa)
	AIM36746.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (530 aa)
	AIM36833.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (592 aa)
	AIM36872.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1042 aa)
	AIM37257.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1108 aa)
	AIM37258.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (634 aa)
	AIM37270.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1041 aa)
	AIM37271.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)
	AIM37993.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1015 aa)
	AIM37994.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (561 aa)
	AIM37997.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (575 aa)
	AIM38136.1	Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology. (495 aa)
	AIM38137.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1036 aa)
	AIM38685.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)
	AIM38686.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1115 aa)
	AIM38910.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (556 aa)
	AIM38986.1	Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology. (558 aa)
	AIM38987.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1125 aa)

Your Current Organism:

Sphingobacterium sp. ML3W

NCBI taxonomy Id: 1538644
Other names: S. sp. ML3W

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIM35981.1	AIM35982.1	KO02_04245	KO02_04250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
AIM35981.1	AIM36097.1	KO02_04245	KO02_04860	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
AIM35981.1	AIM36425.1	KO02_04245	KO02_06705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
AIM35981.1	AIM36744.1	KO02_04245	KO02_08545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Starch-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555
AIM35981.1	AIM36746.1	KO02_04245	KO02_08555	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
AIM35981.1	AIM36833.1	KO02_04245	KO02_09060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
AIM35981.1	AIM37258.1	KO02_04245	KO02_11575	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.464
AIM35981.1	AIM37271.1	KO02_04245	KO02_11650	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
AIM35981.1	AIM37994.1	KO02_04245	KO02_15840	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.735
AIM35981.1	AIM37997.1	KO02_04245	KO02_15860	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
AIM35981.1	AIM38136.1	KO02_04245	KO02_16715	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.626
AIM35981.1	AIM38685.1	KO02_04245	KO02_19775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.691
AIM35981.1	AIM38986.1	KO02_04245	KO02_21535	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.529
AIM35982.1	AIM35981.1	KO02_04250	KO02_04245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
AIM35982.1	AIM36096.1	KO02_04250	KO02_04855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
AIM35982.1	AIM36424.1	KO02_04250	KO02_06700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.696
AIM35982.1	AIM36425.1	KO02_04250	KO02_06705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
AIM35982.1	AIM36739.1	KO02_04250	KO02_08510	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.403
AIM35982.1	AIM36743.1	KO02_04250	KO02_08540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
AIM35982.1	AIM36745.1	KO02_04250	KO02_08550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbohydrate-binding protein SusC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.638