(33 nodes) Mixed, incl. AhpC/TSA family, and SusD family network (Sphingobacterium sp. ML3W)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIM36090.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1582 aa)
	AIM36091.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)
	AIM36092.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)
	AIM36176.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1072 aa)
	AIM36177.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (450 aa)
	AIM36178.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)
	AIM37000.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (232 aa)
	AIM37001.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1114 aa)
	AIM37002.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
	AIM37003.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
	AIM37144.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1206 aa)
	AIM37145.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (482 aa)
	AIM37555.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
	AIM37556.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa)
	AIM37557.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1493 aa)
	AIM37966.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)
	AIM37967.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
	AIM37968.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1072 aa)
	AIM38116.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)
	AIM38117.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa)
	AIM38118.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1521 aa)
	AIM38129.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)
	AIM38130.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (258 aa)
	AIM38131.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)
	AIM38132.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1221 aa)
	AIM38929.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)
	AIM38930.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1114 aa)
	AIM38931.1	Metalloprotease; Derived by automated computational analysis using gene prediction method: Protein Homology. (844 aa)
	AIM39006.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (454 aa)
	AIM39007.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1078 aa)
	AIM39008.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (193 aa)
	AIM39035.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1246 aa)
	AIM39036.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (486 aa)

Your Current Organism:

Sphingobacterium sp. ML3W

NCBI taxonomy Id: 1538644
Other names: S. sp. ML3W

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIM36090.1	AIM36091.1	KO02_04825	KO02_04830	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
AIM36090.1	AIM36092.1	KO02_04825	KO02_04835	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.686
AIM36090.1	AIM36177.1	KO02_04825	KO02_05310	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
AIM36090.1	AIM37002.1	KO02_04825	KO02_10080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
AIM36090.1	AIM37003.1	KO02_04825	KO02_10085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.616
AIM36090.1	AIM37145.1	KO02_04825	KO02_10930	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.794
AIM36090.1	AIM37555.1	KO02_04825	KO02_13305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.603
AIM36090.1	AIM37556.1	KO02_04825	KO02_13310	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
AIM36090.1	AIM37966.1	KO02_04825	KO02_15655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
AIM36090.1	AIM37967.1	KO02_04825	KO02_15660	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
AIM36090.1	AIM38116.1	KO02_04825	KO02_16590	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621
AIM36090.1	AIM38117.1	KO02_04825	KO02_16600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
AIM36090.1	AIM38129.1	KO02_04825	KO02_16680	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.610
AIM36090.1	AIM38131.1	KO02_04825	KO02_16690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
AIM36090.1	AIM38929.1	KO02_04825	KO02_21165	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.680
AIM36090.1	AIM39006.1	KO02_04825	KO02_21640	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
AIM36090.1	AIM39036.1	KO02_04825	KO02_21840	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
AIM36091.1	AIM36090.1	KO02_04830	KO02_04825	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
AIM36091.1	AIM36092.1	KO02_04830	KO02_04835	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
AIM36091.1	AIM36176.1	KO02_04830	KO02_05305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816