(8 nodes) Condensation domain, and Ketoacyl-synthetase C-terminal extension network (Sphingobacterium sp. ML3W)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIM36852.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family. (2048 aa)
	AIM38336.1	Erythronolide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2326 aa)
	AIM38337.1	Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily. (1426 aa)
	AIM38338.1	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (99 aa)
	AIM38339.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	AIM38340.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (801 aa)
	AIM38341.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (424 aa)
	AIM38342.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)

Your Current Organism:

Sphingobacterium sp. ML3W

NCBI taxonomy Id: 1538644
Other names: S. sp. ML3W

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIM36852.1	AIM38336.1	KO02_09190	KO02_17825	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	Erythronolide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AIM36852.1	AIM38337.1	KO02_09190	KO02_17830	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily.	0.999
AIM36852.1	AIM38339.1	KO02_09190	KO02_17840	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.610
AIM36852.1	AIM38340.1	KO02_09190	KO02_17845	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
AIM36852.1	AIM38341.1	KO02_09190	KO02_17850	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
AIM36852.1	AIM38342.1	KO02_09190	KO02_17855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
AIM38336.1	AIM36852.1	KO02_17825	KO02_09190	Erythronolide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	0.999
AIM38336.1	AIM38337.1	KO02_17825	KO02_17830	Erythronolide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily.	0.998
AIM38336.1	AIM38338.1	KO02_17825	KO02_17835	Erythronolide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
AIM38336.1	AIM38339.1	KO02_17825	KO02_17840	Erythronolide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
AIM38336.1	AIM38340.1	KO02_17825	KO02_17845	Erythronolide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
AIM38336.1	AIM38341.1	KO02_17825	KO02_17850	Erythronolide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
AIM38336.1	AIM38342.1	KO02_17825	KO02_17855	Erythronolide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
AIM38337.1	AIM36852.1	KO02_17830	KO02_09190	Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	0.999
AIM38337.1	AIM38336.1	KO02_17830	KO02_17825	Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily.	Erythronolide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AIM38337.1	AIM38338.1	KO02_17830	KO02_17835	Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily.	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
AIM38337.1	AIM38339.1	KO02_17830	KO02_17840	Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
AIM38337.1	AIM38340.1	KO02_17830	KO02_17845	Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AIM38337.1	AIM38341.1	KO02_17830	KO02_17850	Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
AIM38337.1	AIM38342.1	KO02_17830	KO02_17855	Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970