(12 nodes) Mixed, incl. Peptidase M60-like family, and Concanavalin A-like lectin/glucanase domain superfamily network (Sphingobacterium sp. ML3W)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIM35714.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (579 aa)
	AIM35715.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (679 aa)
	AIM35716.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (599 aa)
	AIM35717.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (456 aa)
	AIM36103.1	Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	AIM36104.1	Beta-glucanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	AIM36311.1	Alpha-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1280 aa)
	AIM37202.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (557 aa)
	AIM37790.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (527 aa)
	AIM37951.1	Alpha-1,3/4-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (746 aa)
	AIM38794.1	PRTRC system protein C; Derived by automated computational analysis using gene prediction method: Protein Homology. (602 aa)
	AIM38882.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (575 aa)

Your Current Organism:

Sphingobacterium sp. ML3W

NCBI taxonomy Id: 1538644
Other names: S. sp. ML3W

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIM35714.1	AIM35715.1	KO02_02745	KO02_02750	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
AIM35714.1	AIM35716.1	KO02_02745	KO02_02755	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.811
AIM35714.1	AIM35717.1	KO02_02745	KO02_02760	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
AIM35714.1	AIM36103.1	KO02_02745	KO02_04890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
AIM35714.1	AIM36311.1	KO02_02745	KO02_06075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.600
AIM35714.1	AIM37790.1	KO02_02745	KO02_14720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.642
AIM35715.1	AIM35714.1	KO02_02750	KO02_02745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
AIM35715.1	AIM35716.1	KO02_02750	KO02_02755	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
AIM35715.1	AIM35717.1	KO02_02750	KO02_02760	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
AIM35716.1	AIM35714.1	KO02_02755	KO02_02745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.811
AIM35716.1	AIM35715.1	KO02_02755	KO02_02750	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
AIM35716.1	AIM35717.1	KO02_02755	KO02_02760	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AIM35716.1	AIM36311.1	KO02_02755	KO02_06075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.610
AIM35716.1	AIM37202.1	KO02_02755	KO02_11250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
AIM35716.1	AIM37790.1	KO02_02755	KO02_14720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.572
AIM35717.1	AIM35714.1	KO02_02760	KO02_02745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
AIM35717.1	AIM35715.1	KO02_02760	KO02_02750	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
AIM35717.1	AIM35716.1	KO02_02760	KO02_02755	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AIM35717.1	AIM36311.1	KO02_02760	KO02_06075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.663
AIM35717.1	AIM37202.1	KO02_02760	KO02_11250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619