(12 nodes) Mixed, incl. GntR, C-terminal, and DapA-like network (Sphingobacterium sp. ML3W)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIM35426.1	beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (650 aa)
	AIM35427.1	N-acylglucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
	AIM35428.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (686 aa)
	AIM35429.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (408 aa)
	AIM35430.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)
	AIM35431.1	Dihydrodipicolinate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DapA family. (307 aa)
	AIM35432.1	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
	AIM36386.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (84 aa)
	AIM37664.1	Dihydrodipicolinate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DapA family. (306 aa)
	AIM37665.1	Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology. (511 aa)
	AIM37666.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1085 aa)
	AIM37667.1	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)

Your Current Organism:

Sphingobacterium sp. ML3W

NCBI taxonomy Id: 1538644
Other names: S. sp. ML3W

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIM35426.1	AIM35427.1	KO02_01170	KO02_01175	beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acylglucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
AIM35426.1	AIM35428.1	KO02_01170	KO02_01180	beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.880
AIM35426.1	AIM35429.1	KO02_01170	KO02_01185	beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
AIM35426.1	AIM35430.1	KO02_01170	KO02_01190	beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.898
AIM35426.1	AIM35431.1	KO02_01170	KO02_01195	beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydrodipicolinate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DapA family.	0.776
AIM35426.1	AIM35432.1	KO02_01170	KO02_01200	beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.622
AIM35426.1	AIM37664.1	KO02_01170	KO02_14005	beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydrodipicolinate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DapA family.	0.459
AIM35426.1	AIM37665.1	KO02_01170	KO02_14010	beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.607
AIM35426.1	AIM37666.1	KO02_01170	KO02_14015	beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.509
AIM35426.1	AIM37667.1	KO02_01170	KO02_14020	beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.494
AIM35427.1	AIM35426.1	KO02_01175	KO02_01170	N-acylglucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
AIM35427.1	AIM35428.1	KO02_01175	KO02_01180	N-acylglucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956
AIM35427.1	AIM35429.1	KO02_01175	KO02_01185	N-acylglucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.938
AIM35427.1	AIM35430.1	KO02_01175	KO02_01190	N-acylglucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
AIM35427.1	AIM35431.1	KO02_01175	KO02_01195	N-acylglucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydrodipicolinate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DapA family.	0.990
AIM35427.1	AIM35432.1	KO02_01175	KO02_01200	N-acylglucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
AIM35427.1	AIM36386.1	KO02_01175	KO02_06500	N-acylglucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
AIM35427.1	AIM37664.1	KO02_01175	KO02_14005	N-acylglucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydrodipicolinate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DapA family.	0.977
AIM35427.1	AIM37665.1	KO02_01175	KO02_14010	N-acylglucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.687
AIM35427.1	AIM37666.1	KO02_01175	KO02_14015	N-acylglucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621