(8 nodes) Ectoine catabolic process, and Transcription regulator HTH-like network (Sphingobacterium sp. ML3W)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIM36420.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (80 aa)
	AIM36421.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
	AIM36422.1	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	AIM36423.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	AIM36869.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
	AIM36870.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	AIM36871.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
	AIM37595.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)

Your Current Organism:

Sphingobacterium sp. ML3W

NCBI taxonomy Id: 1538644
Other names: S. sp. ML3W

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIM36420.1	AIM36421.1	KO02_06680	KO02_06685	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
AIM36420.1	AIM36422.1	KO02_06680	KO02_06690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
AIM36420.1	AIM36423.1	KO02_06680	KO02_06695	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
AIM36421.1	AIM36420.1	KO02_06685	KO02_06680	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.623
AIM36421.1	AIM36422.1	KO02_06685	KO02_06690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.745
AIM36421.1	AIM36423.1	KO02_06685	KO02_06695	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.529
AIM36422.1	AIM36420.1	KO02_06690	KO02_06680	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.436
AIM36422.1	AIM36421.1	KO02_06690	KO02_06685	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.745
AIM36422.1	AIM36423.1	KO02_06690	KO02_06695	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
AIM36422.1	AIM36869.1	KO02_06690	KO02_09295	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554
AIM36422.1	AIM37595.1	KO02_06690	KO02_13560	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644
AIM36423.1	AIM36420.1	KO02_06695	KO02_06680	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.436
AIM36423.1	AIM36421.1	KO02_06695	KO02_06685	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.529
AIM36423.1	AIM36422.1	KO02_06695	KO02_06690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
AIM36869.1	AIM36422.1	KO02_09295	KO02_06690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554
AIM36869.1	AIM36870.1	KO02_09295	KO02_09300	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.707
AIM36869.1	AIM36871.1	KO02_09295	KO02_09305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.582
AIM36870.1	AIM36869.1	KO02_09300	KO02_09295	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.707
AIM36870.1	AIM36871.1	KO02_09300	KO02_09305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.691
AIM36870.1	AIM37595.1	KO02_09300	KO02_13560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.734