(16 nodes) Mixed, incl. Protein of unknown function DUF3526, and Transposase, IS4-like network (Sphingobacterium sp. ML3W)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIM35239.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1057 aa)
	AIM35240.1	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	AIM35241.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (782 aa)
	AIM35242.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (786 aa)
	AIM35243.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	AIM35244.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (71 aa)
	AIM35245.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
	AIM38375.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (59 aa)
	AIM38376.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)
	AIM38377.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (459 aa)
	AIM38378.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	AIM38379.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (733 aa)
	AIM38380.1	Fur family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family. (126 aa)
	AIM39043.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	AIM39044.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (470 aa)
	AIM39045.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)

Your Current Organism:

Sphingobacterium sp. ML3W

NCBI taxonomy Id: 1538644
Other names: S. sp. ML3W

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIM35239.1	AIM35240.1	KO02_00055	KO02_00060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
AIM35239.1	AIM35241.1	KO02_00055	KO02_00065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.602
AIM35239.1	AIM38378.1	KO02_00055	KO02_18045	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
AIM35239.1	AIM39043.1	KO02_00055	KO02_21915	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
AIM35240.1	AIM35239.1	KO02_00060	KO02_00055	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
AIM35240.1	AIM35241.1	KO02_00060	KO02_00065	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
AIM35240.1	AIM35243.1	KO02_00060	KO02_00075	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.462
AIM35240.1	AIM38377.1	KO02_00060	KO02_18040	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.627
AIM35240.1	AIM39044.1	KO02_00060	KO02_21920	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.627
AIM35240.1	AIM39045.1	KO02_00060	KO02_21925	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
AIM35241.1	AIM35239.1	KO02_00065	KO02_00055	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.602
AIM35241.1	AIM35240.1	KO02_00065	KO02_00060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
AIM35241.1	AIM35242.1	KO02_00065	KO02_00070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
AIM35242.1	AIM35241.1	KO02_00070	KO02_00065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
AIM35242.1	AIM35243.1	KO02_00070	KO02_00075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618
AIM35242.1	AIM35244.1	KO02_00070	KO02_00080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.465
AIM35243.1	AIM35240.1	KO02_00075	KO02_00060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.462
AIM35243.1	AIM35242.1	KO02_00075	KO02_00070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618
AIM35243.1	AIM35244.1	KO02_00075	KO02_00080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.572
AIM35243.1	AIM35245.1	KO02_00075	KO02_00085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.476