(7 nodes) Mixed, incl. DedA family, and Peptidase family S66 network (Sphingobacterium sp. ML3W)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIM35382.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	AIM35383.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	AIM35385.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	AIM36144.1	Thiol:disulfide interchange protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (365 aa)
	AIM36147.1	Microcin C7 resistance protein MccF; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
	AIM36148.1	Peptidase M14; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)
	AIM36149.1	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)

Your Current Organism:

Sphingobacterium sp. ML3W

NCBI taxonomy Id: 1538644
Other names: S. sp. ML3W

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIM35382.1	AIM35383.1	KO02_00925	KO02_00930	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.536
AIM35383.1	AIM35382.1	KO02_00930	KO02_00925	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.536
AIM35383.1	AIM35385.1	KO02_00930	KO02_00940	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
AIM35385.1	AIM35383.1	KO02_00940	KO02_00930	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
AIM36147.1	AIM36148.1	KO02_05120	KO02_05125	Microcin C7 resistance protein MccF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M14; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.787
AIM36147.1	AIM36149.1	KO02_05120	KO02_05130	Microcin C7 resistance protein MccF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
AIM36148.1	AIM36147.1	KO02_05125	KO02_05120	Peptidase M14; Derived by automated computational analysis using gene prediction method: Protein Homology.	Microcin C7 resistance protein MccF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.787
AIM36148.1	AIM36149.1	KO02_05125	KO02_05130	Peptidase M14; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
AIM36149.1	AIM36147.1	KO02_05130	KO02_05120	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Microcin C7 resistance protein MccF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
AIM36149.1	AIM36148.1	KO02_05130	KO02_05125	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M14; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535