(12 nodes) Mixed, incl. Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA, and HlyD family secretion protein network (Sphingobacterium sp. ML3W)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIM36409.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (123 aa)
	AIM36410.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	AIM36411.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (444 aa)
	AIM36412.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
	AIM36413.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (369 aa)
	AIM36414.1	Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1030 aa)
	AIM36439.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)
	AIM36440.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1028 aa)
	AIM36441.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (367 aa)
	AIM37315.1	Acriflavine resistance protein B; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1440 aa)
	AIM37316.1	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (403 aa)
	AIM38219.1	3',5'-cyclic-nucleotide phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)

Your Current Organism:

Sphingobacterium sp. ML3W

NCBI taxonomy Id: 1538644
Other names: S. sp. ML3W

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIM36409.1	AIM36410.1	KO02_06620	KO02_06625	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.530
AIM36409.1	AIM36411.1	KO02_06620	KO02_06630	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.530
AIM36409.1	AIM36412.1	KO02_06620	KO02_06635	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.407
AIM36410.1	AIM36409.1	KO02_06625	KO02_06620	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.530
AIM36410.1	AIM36411.1	KO02_06625	KO02_06630	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
AIM36410.1	AIM36412.1	KO02_06625	KO02_06635	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.699
AIM36410.1	AIM36413.1	KO02_06625	KO02_06640	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.551
AIM36410.1	AIM36414.1	KO02_06625	KO02_06645	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.550
AIM36411.1	AIM36409.1	KO02_06630	KO02_06620	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.530
AIM36411.1	AIM36410.1	KO02_06630	KO02_06625	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
AIM36411.1	AIM36412.1	KO02_06630	KO02_06635	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
AIM36411.1	AIM36413.1	KO02_06630	KO02_06640	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.757
AIM36411.1	AIM36414.1	KO02_06630	KO02_06645	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.641
AIM36412.1	AIM36409.1	KO02_06635	KO02_06620	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.407
AIM36412.1	AIM36410.1	KO02_06635	KO02_06625	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.699
AIM36412.1	AIM36411.1	KO02_06635	KO02_06630	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
AIM36412.1	AIM36413.1	KO02_06635	KO02_06640	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.961
AIM36412.1	AIM36414.1	KO02_06635	KO02_06645	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.942
AIM36412.1	AIM36439.1	KO02_06635	KO02_06795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.569
AIM36412.1	AIM36441.1	KO02_06635	KO02_06805	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.494