(6 nodes) Nickel cation binding, and ABC 3 transport family network (Sphingobacterium sp. ML3W)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIM38439.1	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	AIM38440.1	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (332 aa)
	AIM38441.1	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	AIM38442.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)
	AIM38443.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
	AIM38444.1	Hydrogenase expression protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (115 aa)

Your Current Organism:

Sphingobacterium sp. ML3W

NCBI taxonomy Id: 1538644
Other names: S. sp. ML3W

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIM38439.1	AIM38440.1	KO02_18385	KO02_18390	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.996
AIM38439.1	AIM38441.1	KO02_18385	KO02_18395	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AIM38439.1	AIM38442.1	KO02_18385	KO02_18400	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659
AIM38439.1	AIM38443.1	KO02_18385	KO02_18405	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.626
AIM38439.1	AIM38444.1	KO02_18385	KO02_18410	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase expression protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.612
AIM38440.1	AIM38439.1	KO02_18390	KO02_18385	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AIM38440.1	AIM38441.1	KO02_18390	KO02_18395	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AIM38440.1	AIM38442.1	KO02_18390	KO02_18400	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
AIM38440.1	AIM38443.1	KO02_18390	KO02_18405	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.797
AIM38440.1	AIM38444.1	KO02_18390	KO02_18410	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Hydrogenase expression protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.640
AIM38441.1	AIM38439.1	KO02_18395	KO02_18385	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AIM38441.1	AIM38440.1	KO02_18395	KO02_18390	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.995
AIM38441.1	AIM38442.1	KO02_18395	KO02_18400	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.849
AIM38441.1	AIM38443.1	KO02_18395	KO02_18405	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.811
AIM38441.1	AIM38444.1	KO02_18395	KO02_18410	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase expression protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AIM38442.1	AIM38439.1	KO02_18400	KO02_18385	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659
AIM38442.1	AIM38440.1	KO02_18400	KO02_18390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.767
AIM38442.1	AIM38441.1	KO02_18400	KO02_18395	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.849
AIM38442.1	AIM38443.1	KO02_18400	KO02_18405	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
AIM38442.1	AIM38444.1	KO02_18400	KO02_18410	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase expression protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.838