(19 nodes) Mixed, incl. Helix-turn-helix domain, group 17, and Protein of unknown function DUF3408 network (Sphingobacterium sp. ML3W)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIM37833.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)
	AIM37835.1	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (101 aa)
	AIM37836.1	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa)
	AIM37854.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (101 aa)
	AIM37855.1	Conjugal transfer protein TraB; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)
	AIM37856.1	Conjugal transfer protein TraA; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	AIM37859.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)
	AIM37860.1	Relaxase; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
	AIM37889.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (489 aa)
	AIM37890.1	Excisionase; Derived by automated computational analysis using gene prediction method: Protein Homology. (98 aa)
	AIM37891.1	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)
	AIM37892.1	Tetracycline regulation of excision, RteC; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	AIM38363.1	Tetracycline regulation of excision, RteC; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	AIM38364.1	Excisionase; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
	AIM38365.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)
	AIM38366.1	DNA topoisomerase I; Derived by automated computational analysis using gene prediction method: Protein Homology. (696 aa)
	AIM38373.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)
	AIM38374.1	DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1796 aa)
	AIM38587.1	Conjugal transfer protein TraB; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)

Your Current Organism:

Sphingobacterium sp. ML3W

NCBI taxonomy Id: 1538644
Other names: S. sp. ML3W

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIM37833.1	AIM37835.1	KO02_14940	KO02_14950	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.549
AIM37833.1	AIM37836.1	KO02_14940	KO02_14955	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.637
AIM37833.1	AIM37854.1	KO02_14940	KO02_15045	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
AIM37833.1	AIM37855.1	KO02_14940	KO02_15050	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713
AIM37833.1	AIM37856.1	KO02_14940	KO02_15055	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
AIM37833.1	AIM37859.1	KO02_14940	KO02_15070	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
AIM37833.1	AIM37860.1	KO02_14940	KO02_15075	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Relaxase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
AIM37833.1	AIM37889.1	KO02_14940	KO02_15245	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.425
AIM37833.1	AIM37891.1	KO02_14940	KO02_15255	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
AIM37833.1	AIM38373.1	KO02_14940	KO02_18015	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.531
AIM37833.1	AIM38587.1	KO02_14940	KO02_19210	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.702
AIM37835.1	AIM37833.1	KO02_14950	KO02_14940	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.549
AIM37835.1	AIM37836.1	KO02_14950	KO02_14955	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.823
AIM37835.1	AIM37854.1	KO02_14950	KO02_15045	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.755
AIM37835.1	AIM37855.1	KO02_14950	KO02_15050	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
AIM37835.1	AIM37856.1	KO02_14950	KO02_15055	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.719
AIM37835.1	AIM37859.1	KO02_14950	KO02_15070	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
AIM37835.1	AIM37860.1	KO02_14950	KO02_15075	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Relaxase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.669
AIM37835.1	AIM37889.1	KO02_14950	KO02_15245	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.680
AIM37835.1	AIM37890.1	KO02_14950	KO02_15250	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Excisionase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772