(7 nodes) Mixed, incl. Chromosome partition, and Lipoprotein transport network (Sphingobacterium sp. ML3W)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	xerC	Integrase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (301 aa)
	AIM38595.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
	AIM38596.1	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology. (899 aa)
	AIM38597.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
	AIM38888.1	Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family. (308 aa)
	AIM38889.1	Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	AIM38890.1	NADPH-dependent FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (173 aa)

Your Current Organism:

Sphingobacterium sp. ML3W

NCBI taxonomy Id: 1538644
Other names: S. sp. ML3W

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIM38595.1	AIM38596.1	KO02_19255	KO02_19260	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
AIM38595.1	AIM38597.1	KO02_19255	KO02_19265	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.525
AIM38596.1	AIM38595.1	KO02_19260	KO02_19255	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
AIM38596.1	AIM38597.1	KO02_19260	KO02_19265	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.885
AIM38596.1	AIM38888.1	KO02_19260	KO02_20905	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family.	0.802
AIM38596.1	AIM38889.1	KO02_19260	KO02_20910	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
AIM38596.1	xerC	KO02_19260	KO02_14445	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integrase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.	0.632
AIM38597.1	AIM38595.1	KO02_19265	KO02_19255	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.525
AIM38597.1	AIM38596.1	KO02_19265	KO02_19260	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.885
AIM38888.1	AIM38596.1	KO02_20905	KO02_19260	Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family.	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802
AIM38888.1	AIM38889.1	KO02_20905	KO02_20910	Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family.	Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
AIM38888.1	AIM38890.1	KO02_20905	KO02_20915	Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family.	NADPH-dependent FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
AIM38888.1	xerC	KO02_20905	KO02_14445	Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family.	Integrase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.	0.589
AIM38889.1	AIM38596.1	KO02_20910	KO02_19260	Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
AIM38889.1	AIM38888.1	KO02_20910	KO02_20905	Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family.	0.987
AIM38889.1	AIM38890.1	KO02_20910	KO02_20915	Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADPH-dependent FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
AIM38889.1	xerC	KO02_20910	KO02_14445	Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integrase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.	0.606
AIM38890.1	AIM38888.1	KO02_20915	KO02_20905	NADPH-dependent FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family.	0.576
AIM38890.1	AIM38889.1	KO02_20915	KO02_20910	NADPH-dependent FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
xerC	AIM38596.1	KO02_14445	KO02_19260	Integrase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632