(15 nodes) Mixed, incl. ANK repeat, and SNF2, N-terminal network (Sphingobacterium sp. ML3W)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIM35797.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	alaS	alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (871 aa)
	AIM36378.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1117 aa)
	AIM36456.1	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
	AIM36595.1	Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
	AIM37284.1	TPR repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
	AIM37578.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (850 aa)
	AIM37629.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (157 aa)
	AIM38484.1	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	AIM38485.1	Deaminase; Metallo-dependent hydrolase superfamily; deaminase with metallo-dependent hydrolase domain; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)
	AIM38486.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
	AIM38621.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (172 aa)
	AIM38622.1	Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the catalase family. (507 aa)
	AIM39195.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (370 aa)
	AIM39310.1	TPR repeat containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)

Your Current Organism:

Sphingobacterium sp. ML3W

NCBI taxonomy Id: 1538644
Other names: S. sp. ML3W

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIM35797.1	AIM36378.1	KO02_03225	KO02_06455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.738
AIM35797.1	AIM36456.1	KO02_03225	KO02_06890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724
AIM35797.1	AIM36595.1	KO02_03225	KO02_07670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.835
AIM35797.1	AIM37284.1	KO02_03225	KO02_11740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TPR repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.817
AIM35797.1	AIM37629.1	KO02_03225	KO02_13790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.689
AIM35797.1	AIM38484.1	KO02_03225	KO02_18650	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
AIM35797.1	AIM38621.1	KO02_03225	KO02_19420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
AIM35797.1	AIM39195.1	KO02_03225	KO02_22795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.651
AIM35797.1	AIM39310.1	KO02_03225	KO02_23395	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TPR repeat containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.850
AIM35797.1	alaS	KO02_03225	KO02_05100	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.	0.933
AIM36378.1	AIM35797.1	KO02_06455	KO02_03225	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.738
AIM36378.1	AIM36456.1	KO02_06455	KO02_06890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
AIM36378.1	AIM36595.1	KO02_06455	KO02_07670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
AIM36378.1	AIM37578.1	KO02_06455	KO02_13440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676
AIM36378.1	AIM37629.1	KO02_06455	KO02_13790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
AIM36378.1	AIM38484.1	KO02_06455	KO02_18650	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
AIM36378.1	AIM38621.1	KO02_06455	KO02_19420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
AIM36378.1	AIM39310.1	KO02_06455	KO02_23395	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TPR repeat containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
AIM36456.1	AIM35797.1	KO02_06890	KO02_03225	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724
AIM36456.1	AIM36378.1	KO02_06890	KO02_06455	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437