5 items (Sphingobacterium sp. ML3W) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIM35797.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	AIM36456.1	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
	AIM37284.1	TPR repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
	AIM37629.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (157 aa)
	AIM39310.1	TPR repeat containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)

Your Current Organism:

Sphingobacterium sp. ML3W

NCBI taxonomy Id: 1538644
Other names: S. sp. ML3W

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIM35797.1	AIM36456.1	KO02_03225	KO02_06890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724
AIM35797.1	AIM37284.1	KO02_03225	KO02_11740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TPR repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.817
AIM35797.1	AIM37629.1	KO02_03225	KO02_13790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.689
AIM35797.1	AIM39310.1	KO02_03225	KO02_23395	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TPR repeat containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.850
AIM36456.1	AIM35797.1	KO02_06890	KO02_03225	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724
AIM36456.1	AIM37284.1	KO02_06890	KO02_11740	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	TPR repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
AIM36456.1	AIM37629.1	KO02_06890	KO02_13790	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
AIM36456.1	AIM39310.1	KO02_06890	KO02_23395	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	TPR repeat containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659
AIM37284.1	AIM35797.1	KO02_11740	KO02_03225	TPR repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.817
AIM37284.1	AIM36456.1	KO02_11740	KO02_06890	TPR repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
AIM37284.1	AIM37629.1	KO02_11740	KO02_13790	TPR repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
AIM37284.1	AIM39310.1	KO02_11740	KO02_23395	TPR repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TPR repeat containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
AIM37629.1	AIM35797.1	KO02_13790	KO02_03225	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.689
AIM37629.1	AIM36456.1	KO02_13790	KO02_06890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
AIM37629.1	AIM37284.1	KO02_13790	KO02_11740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TPR repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
AIM37629.1	AIM39310.1	KO02_13790	KO02_23395	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TPR repeat containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.601
AIM39310.1	AIM35797.1	KO02_23395	KO02_03225	TPR repeat containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.850
AIM39310.1	AIM36456.1	KO02_23395	KO02_06890	TPR repeat containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659
AIM39310.1	AIM37284.1	KO02_23395	KO02_11740	TPR repeat containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TPR repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
AIM39310.1	AIM37629.1	KO02_23395	KO02_13790	TPR repeat containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.601