(34 nodes) Porin activity network (Sphingobacterium sp. ML3W)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIM35584.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)
	AIM35242.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (786 aa)
	AIM35603.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (796 aa)
	AIM35688.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)
	AIM35778.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)
	AIM36090.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1582 aa)
	AIM36140.1	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
	AIM36333.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1032 aa)
	AIM36424.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (996 aa)
	AIM36494.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1091 aa)
	AIM36533.1	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. (962 aa)
	AIM36570.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (521 aa)
	AIM36639.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
	AIM36682.1	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
	AIM36743.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1003 aa)
	AIM36791.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (631 aa)
	AIM36846.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1032 aa)
	AIM37243.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1077 aa)
	AIM37295.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1104 aa)
	AIM37496.1	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology. (172 aa)
	AIM37602.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1202 aa)
	AIM37937.1	Collagen-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1048 aa)
	AIM38181.1	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. (778 aa)
	AIM38225.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)
	AIM38449.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)
	AIM38686.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1115 aa)
	AIM38724.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1234 aa)
	AIM38816.1	Long-chain fatty acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (405 aa)
	AIM38893.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (662 aa)
	AIM38930.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1114 aa)
	AIM39042.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (786 aa)
	AIM39056.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (192 aa)
	AIM39246.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1066 aa)
	AIM39309.1	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology. (458 aa)

Your Current Organism:

Sphingobacterium sp. ML3W

NCBI taxonomy Id: 1538644
Other names: S. sp. ML3W

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIM35242.1	AIM36743.1	KO02_00070	KO02_08540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
AIM35584.1	AIM38225.1	KO02_02055	KO02_17200	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
AIM35688.1	AIM38893.1	KO02_02605	KO02_20945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
AIM35778.1	AIM36570.1	KO02_03130	KO02_07530	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658
AIM35778.1	AIM38893.1	KO02_03130	KO02_20945	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
AIM36140.1	AIM39309.1	KO02_05085	KO02_23390	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644
AIM36570.1	AIM35778.1	KO02_07530	KO02_03130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658
AIM36743.1	AIM35242.1	KO02_08540	KO02_00070	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
AIM36743.1	AIM39042.1	KO02_08540	KO02_21905	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
AIM36846.1	AIM38181.1	KO02_09155	KO02_16965	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
AIM37295.1	AIM38686.1	KO02_11800	KO02_19780	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
AIM38181.1	AIM36846.1	KO02_16965	KO02_09155	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
AIM38225.1	AIM35584.1	KO02_17200	KO02_02055	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
AIM38686.1	AIM37295.1	KO02_19780	KO02_11800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
AIM38893.1	AIM35688.1	KO02_20945	KO02_02605	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
AIM38893.1	AIM35778.1	KO02_20945	KO02_03130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
AIM38893.1	AIM39309.1	KO02_20945	KO02_23390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547
AIM39042.1	AIM36743.1	KO02_21905	KO02_08540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
AIM39309.1	AIM36140.1	KO02_23390	KO02_05085	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644
AIM39309.1	AIM38893.1	KO02_23390	KO02_20945	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547