(44 nodes) Peptidyl-histidine phosphorylation network (Sphingobacterium sp. ML3W)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIM35272.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (636 aa)
	AIM35620.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (610 aa)
	AIM35684.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1229 aa)
	AIM36122.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (552 aa)
	AIM36186.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
	AIM36328.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	AIM36359.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
	AIM36375.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)
	AIM36411.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (444 aa)
	AIM36442.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa)
	AIM36447.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (725 aa)
	AIM36475.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)
	AIM36476.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (582 aa)
	AIM36699.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	AIM36865.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
	AIM36907.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (961 aa)
	AIM36963.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)
	AIM37099.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (488 aa)
	AIM37100.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1193 aa)
	AIM37111.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (726 aa)
	AIM37125.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (127 aa)
	AIM37126.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (597 aa)
	AIM37186.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (753 aa)
	AIM37299.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)
	AIM37534.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
	AIM37537.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (964 aa)
	AIM37673.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
	AIM37866.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (624 aa)
	AIM37940.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1047 aa)
	AIM38044.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (561 aa)
	AIM38147.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (493 aa)
	AIM38231.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
	AIM38545.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
	AIM38554.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1366 aa)
	AIM38583.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)
	AIM38878.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (408 aa)
	AIM38971.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (710 aa)
	AIM38996.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	AIM39019.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1352 aa)
	AIM39097.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (361 aa)
	AIM39185.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (89 aa)
	AIM39187.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
	AIM39201.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)
	AIM39306.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)

Your Current Organism:

Sphingobacterium sp. ML3W

NCBI taxonomy Id: 1538644
Other names: S. sp. ML3W

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIM35272.1	AIM36359.1	KO02_00270	KO02_06325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
AIM35272.1	AIM38996.1	KO02_00270	KO02_21590	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AIM35620.1	AIM35684.1	KO02_02250	KO02_02585	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659
AIM35620.1	AIM36186.1	KO02_02250	KO02_05355	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554
AIM35620.1	AIM37099.1	KO02_02250	KO02_10655	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
AIM35620.1	AIM37100.1	KO02_02250	KO02_10660	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
AIM35620.1	AIM37111.1	KO02_02250	KO02_10730	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.509
AIM35620.1	AIM37125.1	KO02_02250	KO02_10810	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.452
AIM35620.1	AIM38147.1	KO02_02250	KO02_16775	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
AIM35620.1	AIM38554.1	KO02_02250	KO02_19020	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AIM35620.1	AIM38878.1	KO02_02250	KO02_20850	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
AIM35620.1	AIM38971.1	KO02_02250	KO02_21410	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
AIM35620.1	AIM39019.1	KO02_02250	KO02_21720	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.531
AIM35684.1	AIM35620.1	KO02_02585	KO02_02250	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659
AIM35684.1	AIM37099.1	KO02_02585	KO02_10655	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538
AIM35684.1	AIM37100.1	KO02_02585	KO02_10660	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724
AIM35684.1	AIM38147.1	KO02_02585	KO02_16775	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
AIM35684.1	AIM38545.1	KO02_02585	KO02_18970	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.669
AIM35684.1	AIM38554.1	KO02_02585	KO02_19020	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.668
AIM35684.1	AIM38971.1	KO02_02585	KO02_21410	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427