(21 nodes) ABC3 transporter permease protein domain network (Sphingobacterium sp. ML3W)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIM39313.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (409 aa)
	AIM35448.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
	AIM35947.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (798 aa)
	AIM35948.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (802 aa)
	AIM35950.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (814 aa)
	AIM35952.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (813 aa)
	AIM35953.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (801 aa)
	AIM35954.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (792 aa)
	AIM35955.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (786 aa)
	AIM35956.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (787 aa)
	AIM35957.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (793 aa)
	AIM35958.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (790 aa)
	AIM35959.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (801 aa)
	AIM35960.1	Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology. (801 aa)
	AIM35961.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (799 aa)
	AIM35962.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (800 aa)
	AIM36131.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (448 aa)
	AIM36468.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)
	AIM36674.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)
	AIM36763.1	Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. (292 aa)
	AIM38124.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (788 aa)

Your Current Organism:

Sphingobacterium sp. ML3W

NCBI taxonomy Id: 1538644
Other names: S. sp. ML3W

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIM35947.1	AIM35948.1	KO02_04020	KO02_04025	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.588
AIM35947.1	AIM35950.1	KO02_04020	KO02_04035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.403
AIM35947.1	AIM35954.1	KO02_04020	KO02_04055	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
AIM35948.1	AIM35947.1	KO02_04025	KO02_04020	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.588
AIM35948.1	AIM35950.1	KO02_04025	KO02_04035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
AIM35950.1	AIM35947.1	KO02_04035	KO02_04020	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.403
AIM35950.1	AIM35948.1	KO02_04035	KO02_04025	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
AIM35952.1	AIM36468.1	KO02_04045	KO02_06955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
AIM35953.1	AIM35954.1	KO02_04050	KO02_04055	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
AIM35953.1	AIM35955.1	KO02_04050	KO02_04060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.572
AIM35953.1	AIM35956.1	KO02_04050	KO02_04065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
AIM35953.1	AIM35957.1	KO02_04050	KO02_04070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.486
AIM35953.1	AIM35958.1	KO02_04050	KO02_04075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
AIM35953.1	AIM35960.1	KO02_04050	KO02_04085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416
AIM35953.1	AIM35961.1	KO02_04050	KO02_04090	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
AIM35953.1	AIM35962.1	KO02_04050	KO02_04095	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
AIM35954.1	AIM35947.1	KO02_04055	KO02_04020	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
AIM35954.1	AIM35953.1	KO02_04055	KO02_04050	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
AIM35954.1	AIM35955.1	KO02_04055	KO02_04060	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555
AIM35954.1	AIM35956.1	KO02_04055	KO02_04065	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.453