(71 nodes) SusD-like, N-terminal network (Sphingobacterium sp. ML3W)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIM36495.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (576 aa)
	AIM36425.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (542 aa)
	AIM36370.1	Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology. (582 aa)
	AIM38131.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)
	AIM35708.1	Starch-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (505 aa)
	AIM35712.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (505 aa)
	AIM37997.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (575 aa)
	AIM37994.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (561 aa)
	AIM37967.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
	AIM37955.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (623 aa)
	AIM37936.1	Starch-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (684 aa)
	AIM37665.1	Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology. (511 aa)
	AIM37657.1	Glycan metabolism protein RagB; Derived by automated computational analysis using gene prediction method: Protein Homology. (560 aa)
	AIM37641.1	SusD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (579 aa)
	AIM37556.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa)
	AIM37539.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (516 aa)
	AIM37445.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (504 aa)
	AIM37281.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)
	AIM37271.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)
	AIM37258.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (634 aa)
	AIM37244.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (459 aa)
	AIM37145.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (482 aa)
	AIM37093.1	Starch-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (589 aa)
	AIM37061.1	Glycan metabolism protein RagB; Derived by automated computational analysis using gene prediction method: Protein Homology. (549 aa)
	AIM37052.1	Starch-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (560 aa)
	AIM37037.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (618 aa)
	AIM37002.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
	AIM36905.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)
	AIM36847.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (609 aa)
	AIM36833.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (592 aa)
	AIM36822.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
	AIM36746.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (530 aa)
	AIM36744.1	Starch-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (539 aa)
	AIM36334.1	Glycan metabolism protein RagB; Derived by automated computational analysis using gene prediction method: Protein Homology. (632 aa)
	AIM36177.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (450 aa)
	AIM36150.1	Glycan metabolism protein RagB; Derived by automated computational analysis using gene prediction method: Protein Homology. (485 aa)
	AIM36106.1	Glycan metabolism protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (594 aa)
	AIM36097.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (454 aa)
	AIM36091.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)
	AIM36008.1	Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology. (628 aa)
	AIM35982.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (520 aa)
	AIM38032.1	Starch-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (633 aa)
	AIM38117.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa)
	AIM35487.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (442 aa)
	AIM38136.1	Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology. (495 aa)
	AIM38322.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (506 aa)
	AIM38350.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (493 aa)
	AIM38470.1	Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa)
	AIM38473.1	Starch-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (662 aa)
	AIM38551.1	Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology. (542 aa)
	AIM38685.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)
	AIM38723.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (498 aa)
	AIM38740.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (576 aa)
	AIM38743.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (544 aa)
	AIM38795.1	Starch-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (521 aa)
	AIM38797.1	Starch-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (543 aa)
	AIM38898.1	Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology. (579 aa)
	AIM38929.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)
	AIM38946.1	Glycan metabolism protein RagB; Derived by automated computational analysis using gene prediction method: Protein Homology. (514 aa)
	AIM38950.1	Starch-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (504 aa)
	AIM38953.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (507 aa)
	AIM38963.1	Glycan metabolism protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (568 aa)
	AIM38986.1	Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology. (558 aa)
	AIM39006.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (454 aa)
	AIM39025.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (613 aa)
	AIM39027.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (624 aa)
	AIM39036.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (486 aa)
	AIM39060.1	Starch-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (676 aa)
	AIM39074.1	Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology. (568 aa)
	AIM39101.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (448 aa)
	AIM39245.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)

Your Current Organism:

Sphingobacterium sp. ML3W

NCBI taxonomy Id: 1538644
Other names: S. sp. ML3W

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIM35487.1	AIM35708.1	KO02_01535	KO02_02710	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Starch-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
AIM35487.1	AIM35712.1	KO02_01535	KO02_02730	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
AIM35487.1	AIM35982.1	KO02_01535	KO02_04250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
AIM35487.1	AIM36106.1	KO02_01535	KO02_04905	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycan metabolism protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
AIM35487.1	AIM36370.1	KO02_01535	KO02_06400	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
AIM35487.1	AIM36833.1	KO02_01535	KO02_09060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618
AIM35487.1	AIM37061.1	KO02_01535	KO02_10405	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycan metabolism protein RagB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.512
AIM35487.1	AIM37258.1	KO02_01535	KO02_11575	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
AIM35487.1	AIM37994.1	KO02_01535	KO02_15840	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
AIM35487.1	AIM37997.1	KO02_01535	KO02_15860	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
AIM35487.1	AIM38950.1	KO02_01535	KO02_21290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Starch-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
AIM35487.1	AIM38986.1	KO02_01535	KO02_21535	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
AIM35487.1	AIM39060.1	KO02_01535	KO02_22010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Starch-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
AIM35487.1	AIM39074.1	KO02_01535	KO02_22085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.486
AIM35708.1	AIM35487.1	KO02_02710	KO02_01535	Starch-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
AIM35708.1	AIM35712.1	KO02_02710	KO02_02730	Starch-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.701
AIM35708.1	AIM36177.1	KO02_02710	KO02_05310	Starch-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
AIM35708.1	AIM36495.1	KO02_02710	KO02_07115	Starch-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
AIM35708.1	AIM36822.1	KO02_02710	KO02_08995	Starch-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.425
AIM35708.1	AIM36833.1	KO02_02710	KO02_09060	Starch-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413