(5 nodes) Rhodanese-like domain superfamily network (Sphingobacterium sp. ML3W)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIM36055.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	AIM35570.1	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)
	AIM35399.1	NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (104 aa)
	AIM39214.1	Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0176 family. (329 aa)
	AIM37252.1	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa)

Your Current Organism:

Sphingobacterium sp. ML3W

NCBI taxonomy Id: 1538644
Other names: S. sp. ML3W

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIM35399.1	AIM35570.1	KO02_01015	KO02_01980	NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.663
AIM35399.1	AIM37252.1	KO02_01015	KO02_11535	NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621
AIM35570.1	AIM35399.1	KO02_01980	KO02_01015	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.663
AIM35570.1	AIM37252.1	KO02_01980	KO02_11535	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
AIM37252.1	AIM35399.1	KO02_11535	KO02_01015	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621
AIM37252.1	AIM35570.1	KO02_11535	KO02_01980	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929