(8 nodes) Mixed, incl. Peptidoglycan binding, and tRNA pseudouridine synthesis network (Nitrosomonas sp. AL212)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	prmA	Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. (305 aa)
	ADZ25331.1	MJ0042 family finger-like protein; KEGG: net:Neut_1897 zinc finger-domain-containing protein; TIGRFAM: Zinc finger/thioredoxin putative; PFAM: Protein of unknown function DUF3426. (275 aa)
	ADZ25895.1	TIGRFAM: Motility protein FimV, N-terminal; Motility protein FimV, C-terminal; KEGG: neu:NE0690 transmembrane protein. (842 aa)
	truA	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (265 aa)
	ADZ25902.1	Sporulation domain-containing protein; PFAM: Sporulation-related domain; KEGG: net:Neut_1156 sporulation domain-containing protein. (235 aa)
	ADZ25903.1	PFAM: Colicin V production, CvpA; KEGG: nmu:Nmul_A1907 colicin V production protein. (168 aa)
	mnmA	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. (359 aa)
	nudJ	PFAM: NUDIX hydrolase domain; KEGG: nmu:Nmul_A2244 NUDIX hydrolase; Belongs to the Nudix hydrolase family. NudJ subfamily. (151 aa)

Your Current Organism:

Nitrosomonas sp. AL212

NCBI taxonomy Id: 153948
Other names: N. sp. AL212

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADZ25331.1	ADZ25895.1	NAL212_0385	NAL212_0975	MJ0042 family finger-like protein; KEGG: net:Neut_1897 zinc finger-domain-containing protein; TIGRFAM: Zinc finger/thioredoxin putative; PFAM: Protein of unknown function DUF3426.	TIGRFAM: Motility protein FimV, N-terminal; Motility protein FimV, C-terminal; KEGG: neu:NE0690 transmembrane protein.	0.715
ADZ25331.1	nudJ	NAL212_0385	NAL212_2548	MJ0042 family finger-like protein; KEGG: net:Neut_1897 zinc finger-domain-containing protein; TIGRFAM: Zinc finger/thioredoxin putative; PFAM: Protein of unknown function DUF3426.	PFAM: NUDIX hydrolase domain; KEGG: nmu:Nmul_A2244 NUDIX hydrolase; Belongs to the Nudix hydrolase family. NudJ subfamily.	0.653
ADZ25331.1	prmA	NAL212_0385	NAL212_0384	MJ0042 family finger-like protein; KEGG: net:Neut_1897 zinc finger-domain-containing protein; TIGRFAM: Zinc finger/thioredoxin putative; PFAM: Protein of unknown function DUF3426.	Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.	0.688
ADZ25895.1	ADZ25331.1	NAL212_0975	NAL212_0385	TIGRFAM: Motility protein FimV, N-terminal; Motility protein FimV, C-terminal; KEGG: neu:NE0690 transmembrane protein.	MJ0042 family finger-like protein; KEGG: net:Neut_1897 zinc finger-domain-containing protein; TIGRFAM: Zinc finger/thioredoxin putative; PFAM: Protein of unknown function DUF3426.	0.715
ADZ25895.1	ADZ25902.1	NAL212_0975	NAL212_0982	TIGRFAM: Motility protein FimV, N-terminal; Motility protein FimV, C-terminal; KEGG: neu:NE0690 transmembrane protein.	Sporulation domain-containing protein; PFAM: Sporulation-related domain; KEGG: net:Neut_1156 sporulation domain-containing protein.	0.471
ADZ25895.1	ADZ25903.1	NAL212_0975	NAL212_0983	TIGRFAM: Motility protein FimV, N-terminal; Motility protein FimV, C-terminal; KEGG: neu:NE0690 transmembrane protein.	PFAM: Colicin V production, CvpA; KEGG: nmu:Nmul_A1907 colicin V production protein.	0.551
ADZ25895.1	nudJ	NAL212_0975	NAL212_2548	TIGRFAM: Motility protein FimV, N-terminal; Motility protein FimV, C-terminal; KEGG: neu:NE0690 transmembrane protein.	PFAM: NUDIX hydrolase domain; KEGG: nmu:Nmul_A2244 NUDIX hydrolase; Belongs to the Nudix hydrolase family. NudJ subfamily.	0.525
ADZ25895.1	truA	NAL212_0975	NAL212_0976	TIGRFAM: Motility protein FimV, N-terminal; Motility protein FimV, C-terminal; KEGG: neu:NE0690 transmembrane protein.	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.826
ADZ25902.1	ADZ25895.1	NAL212_0982	NAL212_0975	Sporulation domain-containing protein; PFAM: Sporulation-related domain; KEGG: net:Neut_1156 sporulation domain-containing protein.	TIGRFAM: Motility protein FimV, N-terminal; Motility protein FimV, C-terminal; KEGG: neu:NE0690 transmembrane protein.	0.471
ADZ25902.1	ADZ25903.1	NAL212_0982	NAL212_0983	Sporulation domain-containing protein; PFAM: Sporulation-related domain; KEGG: net:Neut_1156 sporulation domain-containing protein.	PFAM: Colicin V production, CvpA; KEGG: nmu:Nmul_A1907 colicin V production protein.	0.733
ADZ25902.1	truA	NAL212_0982	NAL212_0976	Sporulation domain-containing protein; PFAM: Sporulation-related domain; KEGG: net:Neut_1156 sporulation domain-containing protein.	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.403
ADZ25903.1	ADZ25895.1	NAL212_0983	NAL212_0975	PFAM: Colicin V production, CvpA; KEGG: nmu:Nmul_A1907 colicin V production protein.	TIGRFAM: Motility protein FimV, N-terminal; Motility protein FimV, C-terminal; KEGG: neu:NE0690 transmembrane protein.	0.551
ADZ25903.1	ADZ25902.1	NAL212_0983	NAL212_0982	PFAM: Colicin V production, CvpA; KEGG: nmu:Nmul_A1907 colicin V production protein.	Sporulation domain-containing protein; PFAM: Sporulation-related domain; KEGG: net:Neut_1156 sporulation domain-containing protein.	0.733
ADZ25903.1	truA	NAL212_0983	NAL212_0976	PFAM: Colicin V production, CvpA; KEGG: nmu:Nmul_A1907 colicin V production protein.	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.426
mnmA	nudJ	NAL212_2547	NAL212_2548	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.	PFAM: NUDIX hydrolase domain; KEGG: nmu:Nmul_A2244 NUDIX hydrolase; Belongs to the Nudix hydrolase family. NudJ subfamily.	0.843
nudJ	ADZ25331.1	NAL212_2548	NAL212_0385	PFAM: NUDIX hydrolase domain; KEGG: nmu:Nmul_A2244 NUDIX hydrolase; Belongs to the Nudix hydrolase family. NudJ subfamily.	MJ0042 family finger-like protein; KEGG: net:Neut_1897 zinc finger-domain-containing protein; TIGRFAM: Zinc finger/thioredoxin putative; PFAM: Protein of unknown function DUF3426.	0.653
nudJ	ADZ25895.1	NAL212_2548	NAL212_0975	PFAM: NUDIX hydrolase domain; KEGG: nmu:Nmul_A2244 NUDIX hydrolase; Belongs to the Nudix hydrolase family. NudJ subfamily.	TIGRFAM: Motility protein FimV, N-terminal; Motility protein FimV, C-terminal; KEGG: neu:NE0690 transmembrane protein.	0.525
nudJ	mnmA	NAL212_2548	NAL212_2547	PFAM: NUDIX hydrolase domain; KEGG: nmu:Nmul_A2244 NUDIX hydrolase; Belongs to the Nudix hydrolase family. NudJ subfamily.	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.	0.843
prmA	ADZ25331.1	NAL212_0384	NAL212_0385	Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.	MJ0042 family finger-like protein; KEGG: net:Neut_1897 zinc finger-domain-containing protein; TIGRFAM: Zinc finger/thioredoxin putative; PFAM: Protein of unknown function DUF3426.	0.688
truA	ADZ25895.1	NAL212_0976	NAL212_0975	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	TIGRFAM: Motility protein FimV, N-terminal; Motility protein FimV, C-terminal; KEGG: neu:NE0690 transmembrane protein.	0.826