STRINGSTRING
ADZ25123.1 ADZ25123.1 ADZ25215.1 ADZ25215.1 radA radA ADZ25298.1 ADZ25298.1 ADZ25487.1 ADZ25487.1 ADZ25523.1 ADZ25523.1 mfd mfd uvrA uvrA polA polA ADZ26266.1 ADZ26266.1 ADZ26352.1 ADZ26352.1 uvrB uvrB dnaX dnaX ADZ26677.1 ADZ26677.1 hrcA hrcA ADZ26790.1 ADZ26790.1 ADZ26817.1 ADZ26817.1 ADZ26822.1 ADZ26822.1 ADZ26878.1 ADZ26878.1 ADZ27060.1 ADZ27060.1 ADZ27172.1 ADZ27172.1 uvrC uvrC ADZ27330.1 ADZ27330.1 ADZ27331.1 ADZ27331.1 ADZ27332.1 ADZ27332.1 mutL mutL dnaQ dnaQ rnhA rnhA ADZ27587.1 ADZ27587.1 recX recX recA recA ADZ27777.1 ADZ27777.1 dnaG dnaG ADZ27879.1 ADZ27879.1 mutS mutS
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
ADZ25123.1DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (371 aa)
ADZ25215.1TIGRFAM: DNA polymerase III, delta subunit; KEGG: nmu:Nmul_A0513 DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta. (334 aa)
radADNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (449 aa)
ADZ25298.1PHP domain protein; PFAM: PHP, C-terminal; KEGG: tin:Tint_3224 SMC domain protein. (885 aa)
ADZ25487.1PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: mca:MCA0551 hypothetical protein. (947 aa)
ADZ25523.1Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (462 aa)
mfdTranscription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1154 aa)
uvrAExcinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (939 aa)
polADNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (916 aa)
ADZ26266.1PFAM: DNA helicase, UvrD/REP type; KEGG: nmu:Nmul_A0563 UvrD/REP helicase. (738 aa)
ADZ26352.1DNA polymerase III, alpha subunit; SMART: Polymerase/histidinol phosphatase, N-terminal; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: nmu:Nmul_A2731 DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type. (1167 aa)
uvrBUvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...] (676 aa)
dnaXDNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (537 aa)
ADZ26677.1DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (559 aa)
hrcAHeat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons. (339 aa)
ADZ26790.1KEGG: net:Neut_1339 DNA mismatch repair protein MutS domain-containing protein; PFAM: DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal. (582 aa)
ADZ26817.1TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; PFAM: RQC domain; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; KEGG: rme:Rmet_3328 ATP-dependent DNA helicase RecQ; SMART: RQC domain; DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain. (651 aa)
ADZ26822.1KEGG: nmu:Nmul_A1412 helicase C2; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; SMART: Helicase, ATP-dependent, c2 type; DEAD-like helicase, N-terminal. (642 aa)
ADZ26878.1KEGG: nhl:Nhal_1339 hypothetical protein. (824 aa)
ADZ27060.1PFAM: DNA polymerase III chi subunit, HolC; KEGG: nmu:Nmul_A0745 DNA polymerase III chi subunit, HolC. (159 aa)
ADZ27172.1TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: nmu:Nmul_A1386 DNA polymerase III, delta prime subunit. (346 aa)
uvrCUvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (605 aa)
ADZ27330.1PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: mmb:Mmol_0462 peptidase S24 and S26 domain protein; Belongs to the peptidase S24 family. (206 aa)
ADZ27331.1DNA polymerase III, epsilon subunit; SMART: Exonuclease; Excinuclease ABC, C subunit, N-terminal; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: mei:Msip34_2797 DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; Excinuclease ABC, C subunit, N-terminal. (463 aa)
ADZ27332.1KEGG: rcu:RCOM_1869020 uv inducible DNA polymerase umuc / mucb, putative; PFAM: DNA-repair protein, UmuC-like. (431 aa)
mutLDNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (597 aa)
dnaQDNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. (245 aa)
rnhARibonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (151 aa)
ADZ27587.1PFAM: Methyltransferase type 11; KEGG: nmu:Nmul_A1620 generic methyl-transferase. (256 aa)
recXRegulatory protein recX; Modulates RecA activity; Belongs to the RecX family. (152 aa)
recArecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (344 aa)
ADZ27777.1SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: nmu:Nmul_A0396 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim domain. (838 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (599 aa)
ADZ27879.1KEGG: slo:Shew_0457 ATP-dependent helicase HepA; PFAM: RNA polymerase recycling, bacterial, C-terminal; Helicase, C-terminal; SNF2-related; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal. (966 aa)
mutSDNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (865 aa)
Your Current Organism:
Nitrosomonas sp. AL212
NCBI taxonomy Id: 153948
Other names: N. sp. AL212
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