STRINGSTRING
ADZ25968.1 ADZ25968.1 ADZ26014.1 ADZ26014.1 ADZ26027.1 ADZ26027.1 fusA fusA tuf tuf infA infA ADZ26072.1 ADZ26072.1 ADZ26111.1 ADZ26111.1 fliA fliA ADZ26129.1 ADZ26129.1 ADZ26142.1 ADZ26142.1 ADZ26154.1 ADZ26154.1 ADZ27941.1 ADZ27941.1 ADZ27908.1 ADZ27908.1 tsf tsf ADZ27885.1 ADZ27885.1 ADZ27854.1 ADZ27854.1 rpoD rpoD ADZ27825.1 ADZ27825.1 ADZ27818.1 ADZ27818.1 ADZ27814.1 ADZ27814.1 ADZ27809.1 ADZ27809.1 ADZ27807.1 ADZ27807.1 rpoH rpoH ihfB ihfB ADZ27771.1 ADZ27771.1 ADZ27768.1 ADZ27768.1 ADZ27751.1 ADZ27751.1 ADZ27726.1 ADZ27726.1 nrdR nrdR ADZ27676.1 ADZ27676.1 ADZ27663.1 ADZ27663.1 ADZ27661.1 ADZ27661.1 ADZ27654.1 ADZ27654.1 ADZ27618.1 ADZ27618.1 fur fur ADZ27602.1 ADZ27602.1 ADZ27601.1 ADZ27601.1 ADZ27567.1 ADZ27567.1 ADZ27498.1 ADZ27498.1 yacG yacG ADZ27429.1 ADZ27429.1 ADZ27390.1 ADZ27390.1 ADZ27347.1 ADZ27347.1 ADZ27330.1 ADZ27330.1 ADZ27264.1 ADZ27264.1 ADZ27241.1 ADZ27241.1 efp efp ADZ27231.1 ADZ27231.1 ADZ27219.1 ADZ27219.1 ADZ27204.1 ADZ27204.1 ADZ27158.1 ADZ27158.1 ADZ27135.1 ADZ27135.1 prfC prfC ADZ27102.1 ADZ27102.1 ADZ27098.1 ADZ27098.1 ADZ27085.1 ADZ27085.1 ADZ27078.1 ADZ27078.1 ADZ27063.1 ADZ27063.1 ADZ26178.1 ADZ26178.1 ADZ26187.1 ADZ26187.1 ADZ26192.1 ADZ26192.1 ADZ26198.1 ADZ26198.1 ADZ26270.1 ADZ26270.1 ADZ26274.1 ADZ26274.1 ADZ26298.1 ADZ26298.1 ADZ26315.1 ADZ26315.1 flhD flhD flhC flhC rsfS rsfS ADZ26470.1 ADZ26470.1 ADZ26485.1 ADZ26485.1 ADZ26486.1 ADZ26486.1 ADZ26586.1 ADZ26586.1 ADZ26601.1 ADZ26601.1 ADZ26638.1 ADZ26638.1 ADZ26654.1 ADZ26654.1 hrcA hrcA ADZ26744.1 ADZ26744.1 ADZ26784.1 ADZ26784.1 ADZ26829.1 ADZ26829.1 ADZ26864.1 ADZ26864.1 ADZ26880.1 ADZ26880.1 greA greA ADZ26926.1 ADZ26926.1 ADZ26938.1 ADZ26938.1 ADZ26939.1 ADZ26939.1 hfq hfq ADZ26945.1 ADZ26945.1 ADZ26946.1 ADZ26946.1 ADZ26958.1 ADZ26958.1 ihfA ihfA infC infC rplA rplA nusG nusG ADZ26979.1 ADZ26979.1 ADZ25884.1 ADZ25884.1 ADZ25925.1 ADZ25925.1 ADZ25932.1 ADZ25932.1 ADZ25933.1 ADZ25933.1 ADZ25934.1 ADZ25934.1 lepA lepA prfA prfA ADZ25126.1 ADZ25126.1 ADZ25172.1 ADZ25172.1 mraZ mraZ ADZ25237.1 ADZ25237.1 ADZ25296.1 ADZ25296.1 ADZ25319.1 ADZ25319.1 ADZ25337.1 ADZ25337.1 ADZ25356.1 ADZ25356.1 ADZ25378.1 ADZ25378.1 nusB nusB ADZ25433.1 ADZ25433.1 ADZ25460.1 ADZ25460.1 ADZ25536.1 ADZ25536.1 mfd mfd ADZ25579.1 ADZ25579.1 ADZ25620.1 ADZ25620.1 ADZ25963.1 ADZ25963.1 ADZ25654.1 ADZ25654.1 greB greB ADZ25694.1 ADZ25694.1 prfB prfB ADZ25762.1 ADZ25762.1 ADZ25763.1 ADZ25763.1 ADZ25769.1 ADZ25769.1 ADZ25789.1 ADZ25789.1 ADZ25800.1 ADZ25800.1 infB infB nusA nusA ADZ25817.1 ADZ25817.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
ADZ25968.1KEGG: neu:NE2094 hypothetical protein. (337 aa)
ADZ26014.1Two component transcriptional regulator PhoB, winged helix family; TIGRFAM: Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; KEGG: net:Neut_2082 two component transcriptional regulator, winged helix family protein; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal. (242 aa)
ADZ26027.1PFAM: FecR protein; KEGG: nmu:Nmul_A1046 Fe2+-dicitrate sensor membrane component-like. (182 aa)
fusATranslation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] (696 aa)
tufTranslation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (396 aa)
infATranslation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. (72 aa)
ADZ26072.1TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; KEGG: meh:M301_1880 biotin/acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; Biotin protein ligase, C-terminal. (331 aa)
ADZ26111.1PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: net:Neut_1373 transcriptional regulator, LysR family protein; Belongs to the LysR transcriptional regulatory family. (291 aa)
fliARNA polymerase, sigma 28 subunit, FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (238 aa)
ADZ26129.1KEGG: neu:NE2478 hypothetical protein; TIGRFAM: Anti-sigma-28 factor, FlgM; PFAM: Anti-sigma-28 factor, FlgM. (101 aa)
ADZ26142.1KEGG: vap:Vapar_1531 two component transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain. (388 aa)
ADZ26154.1Two component transcriptional regulator, winged helix family; KEGG: neu:NE1409 response regulator PhoP; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal. (228 aa)
ADZ27941.1TIGRFAM: ABC transporter ATP-binding protein, ChvD; PFAM: ABC transporter-like; KEGG: gca:Galf_2613 ABC transporter related; SMART: ATPase, AAA+ type, core. (554 aa)
ADZ27908.1Ferric uptake regulator, Fur family; PFAM: Ferric-uptake regulator; KEGG: nmu:Nmul_A2512 ferric uptake regulator family protein; Belongs to the Fur family. (140 aa)
tsfTranslation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. (294 aa)
ADZ27885.1KEGG: net:Neut_2036 transcriptional regulator, Crp/Fnr family protein; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding domain. (250 aa)
ADZ27854.1PFAM: Histone deacetylase superfamily; KEGG: slt:Slit_1540 histone deacetylase. (309 aa)
rpoDRNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (740 aa)
ADZ27825.1PFAM: CopG-like DNA-binding; KEGG: nhl:Nhal_0318 CopG domain protein DNA-binding domain protein. (82 aa)
ADZ27818.1PFAM: CopG-like DNA-binding; KEGG: nhl:Nhal_0318 CopG domain protein DNA-binding domain protein. (82 aa)
ADZ27814.1PFAM: Antitoxin ParD; KEGG: rec:RHECIAT_PC0000824 probable plasmid stabilization protein. (83 aa)
ADZ27809.1KEGG: gvi:gsr0356 hypothetical protein; TIGRFAM: Putative addiction module antidote protein, CC2985; PFAM: Uncharacterised protein family UPF0156/MetJ /Arc repressor. (86 aa)
ADZ27807.1PFAM: Mor transcription activator; KEGG: dac:Daci_1325 hypothetical protein. (132 aa)
rpoHRNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. (281 aa)
ihfBIntegration host factor, beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (96 aa)
ADZ27771.1Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. (425 aa)
ADZ27768.1KEGG: nmu:Nmul_A0389 two component, sigma54 specific, fis family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain. (420 aa)
ADZ27751.1Transcriptional regulator, Crp/Fnr family; KEGG: neu:NE1296 cAMP-dependent protein kinase; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain. (239 aa)
ADZ27726.1PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: slt:Slit_0984 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (328 aa)
nrdRRibonucleotide reductase regulator NrdR-like protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. (148 aa)
ADZ27676.1KEGG: mmb:Mmol_1152 hypothetical protein. (485 aa)
ADZ27663.1PFAM: TonB-dependent receptor, beta-barrel; FecR protein; Tetratricopeptide TPR2; KEGG: neu:NE1298 TPR repeat-containing protein. (1098 aa)
ADZ27661.1PFAM: FecR protein; TonB-dependent receptor, beta-barrel; KEGG: neu:NE1298 TPR repeat-containing protein. (1144 aa)
ADZ27654.1KEGG: net:Neut_2610 Crp/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding domain. (229 aa)
ADZ27618.1KEGG: nmu:Nmul_A0706 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal. (229 aa)
furFerric uptake regulator, Fur family; PFAM: Ferric-uptake regulator; KEGG: neu:NE0616 leucine-rich repeat-containing ferric uptake regulator; Belongs to the Fur family. (146 aa)
ADZ27602.1KEGG: cpi:Cpin_3979 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal. (210 aa)
ADZ27601.1PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: npu:Npun_F3797 multi-sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; PAC motif. (504 aa)
ADZ27567.1SMART: Cyclic nucleotide-binding domain; KEGG: rfr:Rfer_1647 CRP/FNR family transcriptional regulator. (247 aa)
ADZ27498.1RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: nmu:Nmul_A1051 RNA polymerase factor sigma-70; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily. (191 aa)
yacGUncharacterized zinc-binding family protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase. (58 aa)
ADZ27429.1KEGG: dma:DMR_04640 hypothetical protein. (138 aa)
ADZ27390.1KEGG: neu:NE2568 ArsR family regulatory protein; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR. (108 aa)
ADZ27347.1PFAM: Prophage CP4-57 regulatory; KEGG: gca:Galf_2036 phage transcriptional regulator, AlpA. (76 aa)
ADZ27330.1PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: mmb:Mmol_0462 peptidase S24 and S26 domain protein; Belongs to the peptidase S24 family. (206 aa)
ADZ27264.1KEGG: bam:Bamb_4189 plasmid stability protein-like protein. (79 aa)
ADZ27241.1KEGG: nmu:Nmul_A0694 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2. (162 aa)
efpTranslation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. (187 aa)
ADZ27231.1KEGG: pin:Ping_0586 hypothetical protein. (259 aa)
ADZ27219.1PFAM: Cyclic nucleotide-binding domain; KEGG: bxe:Bxe_B1519 Crp/FNR family transcriptional regulator. (245 aa)
ADZ27204.1PAS sensor protein; SMART: PAC motif; PAS; TIGRFAM: PAS; KEGG: nhl:Nhal_0365 PAS sensor protein; PFAM: PAS fold. (150 aa)
ADZ27158.1Two component transcriptional regulator PhoB, winged helix family; TIGRFAM: Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; KEGG: azo:azo0164 phosphate regulon transcriptional regulatory protein; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal. (240 aa)
ADZ27135.1KEGG: slt:Slit_2633 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core. (478 aa)
prfCPeptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. (536 aa)
ADZ27102.1KEGG: meh:M301_1663 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal. (205 aa)
ADZ27098.1PFAM: Polyketide cyclase/dehydrase; KEGG: bph:Bphy_5310 hypothetical protein. (166 aa)
ADZ27085.1PFAM: Peptide chain release factor class I/class II; KEGG: sde:Sde_3201 hypothetical protein. (139 aa)
ADZ27078.1Putative RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: nde:NIDE3487 putative RNA polymerase ECF-type sigma factor containing TPR repeat; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2. (417 aa)
ADZ27063.1KEGG: net:Neut_1839 two component transcriptional regulator, LuxR family protein; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal. (210 aa)
ADZ26178.1PFAM: Helix-turn-helix, HxlR type; KEGG: ava:Ava_1063 transcriptional regulator. (106 aa)
ADZ26187.1KEGG: nmu:Nmul_A2411 response regulator receiver domain-containing protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain. (129 aa)
ADZ26192.1KEGG: nmu:Nmul_A1235 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal. (210 aa)
ADZ26198.1PFAM: Cupin 2, conserved barrel; KEGG: tdn:Suden_1847 hypothetical protein. (103 aa)
ADZ26270.1PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: nhl:Nhal_1613 LysR substrate-binding protein; Belongs to the LysR transcriptional regulatory family. (303 aa)
ADZ26274.1Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; PAS fold; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; KEGG: net:Neut_0219 multi-sensor hybrid histidine kinase; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domai [...] (1236 aa)
ADZ26298.1PFAM: Filamentation induced by cAMP/death on curing-related; Protein of unknown function DUF977; KEGG: net:Neut_2415 filamentation induced by cAMP protein Fic. (349 aa)
ADZ26315.1Transcriptional regulator, XRE family; SMART: Helix-turn-helix type 3; KEGG: neu:NE1587 helix-hairpin-helix DNA-binding motif-containing protein. (122 aa)
flhDFlagellar transcriptional activator; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhD family. (105 aa)
flhCFlagellar transcriptional activator FlhC; Functions in complex with FlhD as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhC family. (178 aa)
rsfSIojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. (108 aa)
ADZ26470.1PFAM: Transcription elongation factor, GreA/GreB, C-terminal; KEGG: pmy:Pmen_0271 nucleoside diphosphate kinase regulator. (136 aa)
ADZ26485.1methylated-DNA/protein-cysteine methyltransferase; KEGG: pfl:PFL_3409 ADA regulatory protein; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding. (177 aa)
ADZ26486.1PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rma:Rmag_0986 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (297 aa)
ADZ26586.1Transcriptional regulator NikR, CopG family; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family. (153 aa)
ADZ26601.1PFAM: Helix-turn-helix, Fis-type; KEGG: nmu:Nmul_A0132 fis family transcriptional regulator; Belongs to the transcriptional regulatory Fis family. (80 aa)
ADZ26638.1Transcriptional regulator, Crp/Fnr family; SMART: Cyclic nucleotide-binding domain; KEGG: vap:Vapar_5993 transcriptional regulator, Crp/Fnr family. (236 aa)
ADZ26654.1KEGG: csa:Csal_1427 MerR family transcriptional regulator. (105 aa)
hrcAHeat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons. (339 aa)
ADZ26744.1PFAM: Protein of unknown function DUF3465; KEGG: neu:NE2443 hypothetical protein. (230 aa)
ADZ26784.1KEGG: nmu:Nmul_A0728 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal. (218 aa)
ADZ26829.1ArsC family protein; KEGG: bmq:BMQ_5004 hypothetical protein; TIGRFAM: Transcriptional regulator Spx/MgsR; PFAM: Arsenate reductase-like; Belongs to the ArsC family. (117 aa)
ADZ26864.1PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: neu:NE1544 transcription regulator LysR; Belongs to the LysR transcriptional regulatory family. (307 aa)
ADZ26880.1PFAM: Prophage CP4-57 regulatory; KEGG: vcj:VCD_002586 transcriptional regulator. (67 aa)
greATranscription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. (158 aa)
ADZ26926.1PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: neu:NE0572 transcriptional regulator CysB-like protein; Belongs to the LysR transcriptional regulatory family. (311 aa)
ADZ26938.1KEGG: vap:Vapar_1531 two component transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain. (386 aa)
ADZ26939.1PFAM: Modulator of Rho-dependent transcription termination; KEGG: neu:NE0186 hypothetical protein. (84 aa)
hfqRNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. (81 aa)
ADZ26945.1KEGG: neu:NE0061 sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein. (107 aa)
ADZ26946.1RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (482 aa)
ADZ26958.1Regulatory protein MerR; KEGG: reu:Reut_A1282 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR. (125 aa)
ihfAIntegration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (98 aa)
infCTranslation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. (184 aa)
rplARibosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (231 aa)
nusGNusG antitermination factor; Participates in transcription elongation, termination and antitermination. (177 aa)
ADZ26979.1KEGG: neu:NE2052 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal. (396 aa)
ADZ25884.1Transcriptional regulator, HxlR family; PFAM: Helix-turn-helix, HxlR type; KEGG: nmu:Nmul_A0947 putative transcriptional regulator. (118 aa)
ADZ25925.1Hypothetical protein; KEGG: meh:M301_1799 phage transcriptional regulator, AlpA. (81 aa)
ADZ25932.1RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: nmu:Nmul_A1746 RNA polymerase sigma factor RpoE; TIGRFAM: RNA polymerase sigma-70 RpoE type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily. (199 aa)
ADZ25933.1PFAM: Anti sigma-E protein RseA, N-terminal; KEGG: nmu:Nmul_A1747 anti sigma-E protein RseA. (182 aa)
ADZ25934.1PFAM: MucB/RseB; KEGG: nmu:Nmul_A1748 sigma E regulatory protein, MucB/RseB. (328 aa)
lepAGTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. (597 aa)
prfAPeptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. (359 aa)
ADZ25126.1KEGG: nmu:Nmul_A1770 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal. (604 aa)
ADZ25172.1Transcriptional regulator, MerR family; TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: hse:Hsero_1607 transcription regulator protein; SMART: HTH transcriptional regulator, MerR. (155 aa)
mraZMraZ protein; KEGG: nmu:Nmul_A2503 cell division protein MraZ; TIGRFAM: MraZ; PFAM: MraZ domain; Belongs to the MraZ family. (148 aa)
ADZ25237.1KEGG: sus:Acid_1755 two component LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain. (241 aa)
ADZ25296.1KEGG: neu:NE0262 hypothetical protein; TIGRFAM: Putative addiction module antidote protein, CC2985; PFAM: Uncharacterised protein family UPF0156/MetJ /Arc repressor. (86 aa)
ADZ25319.1KEGG: gbm:Gbem_3496 hypothetical protein. (64 aa)
ADZ25337.1Regulatory protein ArsR; KEGG: cvi:CV_2438 transcription regulator protein, arsenical resistance operon repressor; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR. (107 aa)
ADZ25356.1Diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s); TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; CHASE2; PAS fold; Diguanylate cyclase, predicted; KEGG: neu:NE2075 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted. (958 aa)
ADZ25378.1Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system. (83 aa)
nusBNusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. (166 aa)
ADZ25433.1Two component, sigma54 specific, transcriptional regulator, Fis family; KEGG: neu:NE2081 sigma-54 dependent response regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core. (437 aa)
ADZ25460.1Protein of unknown function DUF28; KEGG: nmu:Nmul_A2722 hypothetical protein; TIGRFAM: Protein of unknown function DUF28; PFAM: Protein of unknown function DUF28. (241 aa)
ADZ25536.1Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system. (82 aa)
mfdTranscription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1154 aa)
ADZ25579.1PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: nmu:Nmul_A1145 transcriptional regulator CysB-like protein; Belongs to the LysR transcriptional regulatory family. (309 aa)
ADZ25620.1KEGG: tmz:Tmz1t_3847 Hpt sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; HAMP linker [...] (916 aa)
ADZ25963.1Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-3; KEGG: rru:Rru_A2406 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; PAC motif; PAS; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain. (1222 aa)
ADZ25654.1KEGG: sus:Acid_1755 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain. (225 aa)
greBTranscription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. (182 aa)
ADZ25694.1Uracil phosphoribosyltransferase; KEGG: net:Neut_0450 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; PFAM: Phosphoribosyltransferase. (168 aa)
prfBHypothetical protein; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. (368 aa)
ADZ25762.1KEGG: xop:PXO_00213 hypothetical protein. (236 aa)
ADZ25763.1RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: hse:Hsero_2419 RNA polymerase sigma-E factor protein; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa)
ADZ25769.1Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; PFAM: CHASE; ATPase-like, ATP-binding domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: hch:HCH_00809 signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; PAC motif. (683 aa)
ADZ25789.1Two component transcriptional regulator, LuxR family; Manually curated; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; KEGG: nmu:Nmul_A0728 two component LuxR family transcriptional regulator; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal. (222 aa)
ADZ25800.1PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: nmu:Nmul_A0687 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (305 aa)
infBTranslation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. (884 aa)
nusANusA antitermination factor; Participates in both transcription termination and antitermination. (490 aa)
ADZ25817.1Putative transcriptional regulator; KEGG: neu:NE2153 hypothetical protein. (214 aa)
Your Current Organism:
Nitrosomonas sp. AL212
NCBI taxonomy Id: 153948
Other names: N. sp. AL212
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