(5 nodes) cyclic-di-GMP binding network (Nitrosomonas sp. AL212)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ADZ26021.1	PFAM: Type IV pilus assembly PilZ; KEGG: slt:Slit_1652 type IV pilus assembly PilZ. (239 aa)
	ADZ25770.1	KEGG: gca:Galf_2077 metal dependent phosphohydrolase; PFAM: Metal-dependent hydrolase HDOD; SMART: Metal-dependent phosphohydrolase, HD domain. (287 aa)
	ADZ25399.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: app:CAP2UW1_1706 putative signal transduction protein. (280 aa)
	ycgR	YcgR family protein; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility. (261 aa)
	ADZ26233.1	Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: app:CAP2UW1_3451 putative signal transduction protein. (286 aa)

Your Current Organism:

Nitrosomonas sp. AL212

NCBI taxonomy Id: 153948
Other names: N. sp. AL212

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADZ25770.1	ADZ26233.1	NAL212_0843	NAL212_1337	KEGG: gca:Galf_2077 metal dependent phosphohydrolase; PFAM: Metal-dependent hydrolase HDOD; SMART: Metal-dependent phosphohydrolase, HD domain.	Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: app:CAP2UW1_3451 putative signal transduction protein.	0.773
ADZ26233.1	ADZ25770.1	NAL212_1337	NAL212_0843	Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: app:CAP2UW1_3451 putative signal transduction protein.	KEGG: gca:Galf_2077 metal dependent phosphohydrolase; PFAM: Metal-dependent hydrolase HDOD; SMART: Metal-dependent phosphohydrolase, HD domain.	0.773