STRINGSTRING
ADZ26897.1 ADZ26897.1 ADZ25183.1 ADZ25183.1 mfd mfd ADZ26351.1 ADZ26351.1 ADZ26391.1 ADZ26391.1 uvrB uvrB ADZ26664.1 ADZ26664.1 recG recG priA priA ADZ26817.1 ADZ26817.1 ADZ27935.1 ADZ27935.1 ADZ27879.1 ADZ27879.1 ADZ27599.1 ADZ27599.1 ADZ27357.1 ADZ27357.1 secA secA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ADZ26897.1KEGG: nhl:Nhal_4024 helicase domain protein; PFAM: Helicase, C-terminal; SNF2-related; SMART: Helicase, C-terminal; DEAD-like helicase, N-terminal. (934 aa)
ADZ25183.1PFAM: Restriction endonuclease, type I, EcoEI, R subunit/Type III, Res subunit, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; KEGG: gca:Galf_0381 type I site-specific deoxyribonuclease; SMART: DEAD-like helicase, N-terminal. (787 aa)
mfdTranscription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1154 aa)
ADZ26351.1Metal dependent phosphohydrolase; TIGRFAM: CRISPR-associated HD domain; Helicase Cas3, CRISPR-associated, core; Uncharacterised protein family HDIG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Metal-dependent phosphohydrolase, HD subdomain; KEGG: mfa:Mfla_0601 metal dependent phosphohydrolase; SMART: DEAD-like helicase, N-terminal; Metal-dependent phosphohydrolase, HD domain. (754 aa)
ADZ26391.1SNF2-related protein; KEGG: rce:RC1_0099 helicase, SNF2 family, putative; PFAM: SNF2-related; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal. (951 aa)
uvrBUvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...] (676 aa)
ADZ26664.1KEGG: nmu:Nmul_A2657 DEAD/DEAH box helicase-like; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Belongs to the DEAD box helicase family. (476 aa)
recGATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (679 aa)
priAPrimosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (737 aa)
ADZ26817.1TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; PFAM: RQC domain; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; KEGG: rme:Rmet_3328 ATP-dependent DNA helicase RecQ; SMART: RQC domain; DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain. (651 aa)
ADZ27935.1KEGG: slt:Slit_2350 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Belongs to the DEAD box helicase family. (445 aa)
ADZ27879.1KEGG: slo:Shew_0457 ATP-dependent helicase HepA; PFAM: RNA polymerase recycling, bacterial, C-terminal; Helicase, C-terminal; SNF2-related; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal. (966 aa)
ADZ27599.1KEGG: nmu:Nmul_A1799 DEAD/DEAH box helicase-like; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Belongs to the DEAD box helicase family. (457 aa)
ADZ27357.1TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpA type; PFAM: Helicase-associated domain; Helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Domain of unknown function DUF1605; KEGG: nmu:Nmul_A1393 ATP-dependent helicase HrpA; SMART: Helicase-associated domain; DEAD-like helicase, N-terminal; Helicase, C-terminal; ATPase, AAA+ type, core. (1252 aa)
secAPreprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. (910 aa)
Your Current Organism:
Nitrosomonas sp. AL212
NCBI taxonomy Id: 153948
Other names: N. sp. AL212
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