STRINGSTRING
CSCA_3496 CSCA_3496 CSCA_3271 CSCA_3271 coaD coaD tmcAL tmcAL CSCA_2775 CSCA_2775 CSCA_2632 CSCA_2632 CSCA_2631 CSCA_2631 CSCA_0042 CSCA_0042 CSCA_0239 CSCA_0239 cysS cysS tyrS tyrS CSCA_0588 CSCA_0588 CSCA_0589 CSCA_0589 CSCA_0739 CSCA_0739 CSCA_0693 CSCA_0693 argS argS CSCA_1475 CSCA_1475 mnmA mnmA CSCA_1535 CSCA_1535 CSCA_1722 CSCA_1722 CSCA_2352 CSCA_2352 CSCA_2353 CSCA_2353 gltX gltX CSCA_2484 CSCA_2484 CSCA_2485 CSCA_2485 glnS glnS nadD nadD valS valS metG metG tilS tilS cysS-2 cysS-2 CSCA_4334 CSCA_4334 trpS trpS tyrS-2 tyrS-2 CSCA_4593 CSCA_4593 guaA guaA ileS ileS CSCA_3941 CSCA_3941 leuS leuS CSCA_3760 CSCA_3760 CSCA_3688 CSCA_3688 CSCA_3687 CSCA_3687 argG argG nadE nadE
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CSCA_3496Protein of unknown function DUF218. (197 aa)
CSCA_3271Hypothetical protein. (327 aa)
coaDPantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. (160 aa)
tmcALProtein of unknown function DUF795; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34. (408 aa)
CSCA_2775Riboflavin biosynthesis protein RibF; Belongs to the ribF family. (312 aa)
CSCA_2632Electron transfer flavoprotein alpha/beta-subunit. (259 aa)
CSCA_2631Electron transfer flavoprotein alpha/beta-subunit. (335 aa)
CSCA_0042Asparagine synthase (glutamine-hydrolyzing). (654 aa)
CSCA_0239PP-loop domain-containing protein. (274 aa)
cysScysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (472 aa)
tyrStyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. (407 aa)
CSCA_0588Electron transfer flavoprotein alpha/beta-subunit. (261 aa)
CSCA_0589Electron transfer flavoprotein alpha subunit. (314 aa)
CSCA_0739Protein of unknown function DUF218. (218 aa)
CSCA_0693valyl-tRNA synthetase. (799 aa)
argSarginyl-tRNA synthetase. (563 aa)
CSCA_1475Cytidylyltransferase. (1620 aa)
mnmAtRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. (358 aa)
CSCA_1535Asparagine synthase (glutamine-hydrolyzing). (613 aa)
CSCA_1722PP-loop domain protein. (267 aa)
CSCA_2352Electron transfer flavoprotein subunit alpha. (325 aa)
CSCA_2353Electron transfer flavoprotein subunit beta. (265 aa)
gltXglutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (484 aa)
CSCA_2484Electron transfer flavoprotein alpha/beta-subunit. (400 aa)
CSCA_2485Electron transfer flavoprotein alpha/beta-subunit. (262 aa)
glnSglutaminyl-tRNA synthetase. (554 aa)
nadDNicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (200 aa)
valSvalyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. (882 aa)
metGmethionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. (644 aa)
tilStRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. (464 aa)
cysS-2cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (465 aa)
CSCA_4334Citrate lyase ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase. (348 aa)
trpStryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family. (335 aa)
tyrS-2tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. (406 aa)
CSCA_4593PP-loop domain protein; Belongs to the TtcA family. (245 aa)
guaAGMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. (510 aa)
ileSisoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily. (1034 aa)
CSCA_3941Thiamine biosynthesis protein. (327 aa)
leuSleucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (812 aa)
CSCA_3760PP-loop domain protein; Belongs to the TtcA family. (290 aa)
CSCA_3688Electron transfer flavoprotein alpha/beta-subunit. (259 aa)
CSCA_3687Electron transfer flavoprotein alpha/beta-subunit. (334 aa)
argGArgininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. (401 aa)
nadENAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. (637 aa)
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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