(15 nodes) Mixed, incl. AhpD-like, and Alcohol catabolic process network (Sphingomonas taxi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIT07705.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
	AIT07707.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)
	AIT08322.1	Gamma-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
	AIT08323.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)
	AIT07708.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (275 aa)
	AIT07709.1	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa)
	AIT07710.1	5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
	AIT08324.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (488 aa)
	AIT07712.1	Biphenyl 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (173 aa)
	AIT07713.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	AIT07714.1	acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
	AIT07715.1	Nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)
	AIT07716.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
	AIT07718.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)
	AIT08327.1	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa)

Your Current Organism:

Sphingomonas taxi

NCBI taxonomy Id: 1549858
Other names: ATCC 55669, Erwinia taxi, S. taxi, strain STJ.EPI.H7

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIT07705.1	AIT07715.1	MC45_16505	MC45_16580	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468
AIT07707.1	AIT07708.1	MC45_16520	MC45_16535	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.485
AIT07707.1	AIT07709.1	MC45_16520	MC45_16540	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
AIT07707.1	AIT07710.1	MC45_16520	MC45_16545	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
AIT07707.1	AIT07714.1	MC45_16520	MC45_16575	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.647
AIT07707.1	AIT08322.1	MC45_16520	MC45_16525	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gamma-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
AIT07707.1	AIT08323.1	MC45_16520	MC45_16530	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
AIT07707.1	AIT08324.1	MC45_16520	MC45_16555	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
AIT07707.1	AIT08327.1	MC45_16520	MC45_16625	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
AIT07708.1	AIT07707.1	MC45_16535	MC45_16520	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.485
AIT07708.1	AIT07709.1	MC45_16535	MC45_16540	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AIT07708.1	AIT07710.1	MC45_16535	MC45_16545	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.788
AIT07708.1	AIT07714.1	MC45_16535	MC45_16575	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.526
AIT07708.1	AIT08322.1	MC45_16535	MC45_16525	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Gamma-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659
AIT07708.1	AIT08323.1	MC45_16535	MC45_16530	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.777
AIT07709.1	AIT07707.1	MC45_16540	MC45_16520	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
AIT07709.1	AIT07708.1	MC45_16540	MC45_16535	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.773
AIT07709.1	AIT07710.1	MC45_16540	MC45_16545	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AIT07709.1	AIT07714.1	MC45_16540	MC45_16575	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
AIT07709.1	AIT07715.1	MC45_16540	MC45_16580	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561