(5 nodes) Mixed, incl. Cobalamin binding, and IrrE N-terminal-like domain network (Sphingomonas taxi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIT07325.1	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)
	AIT07326.1	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (508 aa)
	AIT07329.1	methylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)
	AIT08264.1	methylmalonyl-CoA mutase; MDM; functions in conversion of succinate to propionate; Derived by automated computational analysis using gene prediction method: Protein Homology. (743 aa)
	AIT07331.1	acetyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (665 aa)

Your Current Organism:

Sphingomonas taxi

NCBI taxonomy Id: 1549858
Other names: ATCC 55669, Erwinia taxi, S. taxi, strain STJ.EPI.H7

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIT07325.1	AIT07326.1	MC45_14145	MC45_14150	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
AIT07325.1	AIT07329.1	MC45_14145	MC45_14165	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
AIT07325.1	AIT07331.1	MC45_14145	MC45_14180	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
AIT07325.1	AIT08264.1	MC45_14145	MC45_14170	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA mutase; MDM; functions in conversion of succinate to propionate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.673
AIT07326.1	AIT07325.1	MC45_14150	MC45_14145	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
AIT07326.1	AIT07329.1	MC45_14150	MC45_14165	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
AIT07326.1	AIT07331.1	MC45_14150	MC45_14180	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AIT07326.1	AIT08264.1	MC45_14150	MC45_14170	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA mutase; MDM; functions in conversion of succinate to propionate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
AIT07329.1	AIT07325.1	MC45_14165	MC45_14145	methylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
AIT07329.1	AIT07326.1	MC45_14165	MC45_14150	methylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
AIT07329.1	AIT07331.1	MC45_14165	MC45_14180	methylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
AIT07329.1	AIT08264.1	MC45_14165	MC45_14170	methylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA mutase; MDM; functions in conversion of succinate to propionate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AIT07331.1	AIT07325.1	MC45_14180	MC45_14145	acetyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
AIT07331.1	AIT07326.1	MC45_14180	MC45_14150	acetyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AIT07331.1	AIT07329.1	MC45_14180	MC45_14165	acetyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
AIT07331.1	AIT08264.1	MC45_14180	MC45_14170	acetyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA mutase; MDM; functions in conversion of succinate to propionate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.880
AIT08264.1	AIT07325.1	MC45_14170	MC45_14145	methylmalonyl-CoA mutase; MDM; functions in conversion of succinate to propionate; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.673
AIT08264.1	AIT07326.1	MC45_14170	MC45_14150	methylmalonyl-CoA mutase; MDM; functions in conversion of succinate to propionate; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
AIT08264.1	AIT07329.1	MC45_14170	MC45_14165	methylmalonyl-CoA mutase; MDM; functions in conversion of succinate to propionate; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AIT08264.1	AIT07331.1	MC45_14170	MC45_14180	methylmalonyl-CoA mutase; MDM; functions in conversion of succinate to propionate; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.880