(21 nodes) TonB box network (Sphingomonas taxi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIT05147.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (779 aa)
	AIT05154.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (831 aa)
	AIT07884.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (818 aa)
	AIT05231.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (798 aa)
	AIT05305.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (755 aa)
	AIT05360.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (768 aa)
	AIT05456.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (966 aa)
	AIT05473.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (900 aa)
	AIT05476.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1031 aa)
	AIT05589.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (911 aa)
	AIT05590.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (907 aa)
	AIT05710.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1027 aa)
	AIT05947.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1004 aa)
	AIT05948.1	Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology. (548 aa)
	AIT06231.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (761 aa)
	AIT06469.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1291 aa)
	AIT06704.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1086 aa)
	AIT08240.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (794 aa)
	AIT07691.1	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	AIT07729.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1078 aa)
	AIT08341.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (949 aa)

Your Current Organism:

Sphingomonas taxi

NCBI taxonomy Id: 1549858
Other names: ATCC 55669, Erwinia taxi, S. taxi, strain STJ.EPI.H7

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIT05147.1	AIT05154.1	MC45_00360	MC45_00410	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.583
AIT05147.1	AIT05456.1	MC45_00360	MC45_02500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
AIT05147.1	AIT05473.1	MC45_00360	MC45_02615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606
AIT05147.1	AIT05476.1	MC45_00360	MC45_02635	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.742
AIT05147.1	AIT05710.1	MC45_00360	MC45_04045	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.701
AIT05147.1	AIT05947.1	MC45_00360	MC45_05505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
AIT05147.1	AIT06231.1	MC45_00360	MC45_07340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.657
AIT05147.1	AIT06469.1	MC45_00360	MC45_08930	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658
AIT05147.1	AIT06704.1	MC45_00360	MC45_10325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.660
AIT05147.1	AIT07729.1	MC45_00360	MC45_16705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.752
AIT05147.1	AIT07884.1	MC45_00360	MC45_00485	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.631
AIT05154.1	AIT05147.1	MC45_00410	MC45_00360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.583
AIT05154.1	AIT05231.1	MC45_00410	MC45_00940	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
AIT05154.1	AIT05360.1	MC45_00410	MC45_01880	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554
AIT05154.1	AIT05473.1	MC45_00410	MC45_02615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
AIT05154.1	AIT05948.1	MC45_00410	MC45_05515	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
AIT05154.1	AIT06469.1	MC45_00410	MC45_08930	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
AIT05154.1	AIT07691.1	MC45_00410	MC45_16410	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.549
AIT05154.1	AIT08240.1	MC45_00410	MC45_13070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746
AIT05231.1	AIT05154.1	MC45_00940	MC45_00410	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478