(30 nodes) Mixed, incl. Tryptophan halogenase, and JmjC domain network (Sphingomonas taxi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIT05268.1	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (505 aa)
	AIT05375.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	AIT05376.1	Signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (970 aa)
	AIT05377.1	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (498 aa)
	AIT07926.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (938 aa)
	AIT06198.1	Transcription factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
	AIT06199.1	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)
	AIT06200.1	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (508 aa)
	AIT06201.1	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (534 aa)
	AIT08066.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (494 aa)
	AIT06202.1	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (504 aa)
	AIT06203.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1150 aa)
	AIT06617.1	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (504 aa)
	AIT06618.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (481 aa)
	AIT08146.1	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (490 aa)
	AIT07037.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1038 aa)
	AIT08217.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)
	AIT07082.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
	AIT07083.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1010 aa)
	AIT07084.1	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (513 aa)
	AIT07617.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
	AIT07618.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1070 aa)
	AIT07619.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
	AIT08309.1	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)
	AIT07620.1	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (496 aa)
	AIT07627.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
	AIT07628.1	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (495 aa)
	AIT07629.1	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)
	AIT07630.1	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	AIT07631.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1006 aa)

Your Current Organism:

Sphingomonas taxi

NCBI taxonomy Id: 1549858
Other names: ATCC 55669, Erwinia taxi, S. taxi, strain STJ.EPI.H7

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIT05268.1	AIT05375.1	MC45_01225	MC45_01970	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
AIT05268.1	AIT05376.1	MC45_01225	MC45_01975	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.719
AIT05268.1	AIT06198.1	MC45_01225	MC45_07110	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcription factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.735
AIT05268.1	AIT06199.1	MC45_01225	MC45_07115	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
AIT05268.1	AIT06203.1	MC45_01225	MC45_07140	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.670
AIT05268.1	AIT07037.1	MC45_01225	MC45_12325	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
AIT05268.1	AIT07082.1	MC45_01225	MC45_12640	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664
AIT05268.1	AIT07083.1	MC45_01225	MC45_12645	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.706
AIT05268.1	AIT07617.1	MC45_01225	MC45_15980	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644
AIT05268.1	AIT07618.1	MC45_01225	MC45_15985	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
AIT05268.1	AIT07619.1	MC45_01225	MC45_15990	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.702
AIT05268.1	AIT07629.1	MC45_01225	MC45_16050	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
AIT05268.1	AIT07630.1	MC45_01225	MC45_16055	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.710
AIT05268.1	AIT07631.1	MC45_01225	MC45_16060	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
AIT05268.1	AIT07926.1	MC45_01225	MC45_02010	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
AIT05268.1	AIT08217.1	MC45_01225	MC45_12635	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
AIT05268.1	AIT08309.1	MC45_01225	MC45_15995	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
AIT05375.1	AIT05268.1	MC45_01970	MC45_01225	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
AIT05375.1	AIT05376.1	MC45_01970	MC45_01975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
AIT05375.1	AIT05377.1	MC45_01970	MC45_01980	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724