(13 nodes) Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead, and Carboxylate reductase activity network (Sphingomonas taxi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIT05186.1	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (739 aa)
	AIT05187.1	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	AIT05188.1	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
	AIT05719.1	Isoquinoline 1-oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa)
	AIT08073.1	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (716 aa)
	AIT06824.1	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
	AIT06825.1	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (744 aa)
	AIT06826.1	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (730 aa)
	AIT06827.1	XshC-Cox1-family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
	AIT06828.1	MobA; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)
	AIT07280.1	Aldehyde oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (729 aa)
	AIT07754.1	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (776 aa)
	AIT07755.1	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)

Your Current Organism:

Sphingomonas taxi

NCBI taxonomy Id: 1549858
Other names: ATCC 55669, Erwinia taxi, S. taxi, strain STJ.EPI.H7

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIT05186.1	AIT05187.1	MC45_00665	MC45_00670	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AIT05186.1	AIT05188.1	MC45_00665	MC45_00675	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AIT05186.1	AIT05719.1	MC45_00665	MC45_04100	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Isoquinoline 1-oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
AIT05186.1	AIT06824.1	MC45_00665	MC45_11075	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AIT05186.1	AIT06825.1	MC45_00665	MC45_11080	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
AIT05186.1	AIT06826.1	MC45_00665	MC45_11085	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AIT05186.1	AIT06827.1	MC45_00665	MC45_11090	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	XshC-Cox1-family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
AIT05186.1	AIT06828.1	MC45_00665	MC45_11095	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MobA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.459
AIT05186.1	AIT07754.1	MC45_00665	MC45_16890	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
AIT05186.1	AIT07755.1	MC45_00665	MC45_16895	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
AIT05186.1	AIT08073.1	MC45_00665	MC45_07345	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
AIT05187.1	AIT05186.1	MC45_00670	MC45_00665	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AIT05187.1	AIT05188.1	MC45_00670	MC45_00675	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AIT05187.1	AIT05719.1	MC45_00670	MC45_04100	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Isoquinoline 1-oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.826
AIT05187.1	AIT06824.1	MC45_00670	MC45_11075	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AIT05187.1	AIT06825.1	MC45_00670	MC45_11080	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AIT05187.1	AIT06826.1	MC45_00670	MC45_11085	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AIT05187.1	AIT06827.1	MC45_00670	MC45_11090	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	XshC-Cox1-family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.522
AIT05187.1	AIT07280.1	MC45_00670	MC45_13885	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.557
AIT05187.1	AIT07754.1	MC45_00670	MC45_16890	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990