(15 nodes) Siderophore uptake transmembrane transporter activity network (Sphingomonas taxi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIT05577.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (929 aa)
	AIT05710.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1027 aa)
	AIT07904.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (731 aa)
	AIT05716.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (704 aa)
	AIT05914.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (804 aa)
	AIT05947.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1004 aa)
	AIT06353.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (787 aa)
	AIT06394.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (947 aa)
	AIT06476.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (800 aa)
	AIT07037.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1038 aa)
	AIT07110.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (707 aa)
	AIT07750.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (758 aa)
	AIT07825.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (728 aa)
	AIT05463.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (753 aa)
	AIT07885.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (748 aa)

Your Current Organism:

Sphingomonas taxi

NCBI taxonomy Id: 1549858
Other names: ATCC 55669, Erwinia taxi, S. taxi, strain STJ.EPI.H7

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIT05463.1	AIT05716.1	MC45_02535	MC45_04080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
AIT05463.1	AIT07110.1	MC45_02535	MC45_12845	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
AIT05463.1	AIT07825.1	MC45_02535	MC45_17365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.683
AIT05710.1	AIT05914.1	MC45_04045	MC45_05265	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.604
AIT05710.1	AIT06353.1	MC45_04045	MC45_08130	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.600
AIT05710.1	AIT07750.1	MC45_04045	MC45_16855	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468
AIT05710.1	AIT07825.1	MC45_04045	MC45_17365	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.443
AIT05716.1	AIT05463.1	MC45_04080	MC45_02535	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
AIT05716.1	AIT06394.1	MC45_04080	MC45_08460	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500
AIT05716.1	AIT06476.1	MC45_04080	MC45_08975	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
AIT05716.1	AIT07110.1	MC45_04080	MC45_12845	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
AIT05914.1	AIT05710.1	MC45_05265	MC45_04045	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.604
AIT05947.1	AIT06353.1	MC45_05505	MC45_08130	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
AIT05947.1	AIT07750.1	MC45_05505	MC45_16855	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
AIT05947.1	AIT07885.1	MC45_05505	MC45_00490	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.524
AIT06353.1	AIT05710.1	MC45_08130	MC45_04045	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.600
AIT06353.1	AIT05947.1	MC45_08130	MC45_05505	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
AIT06394.1	AIT05716.1	MC45_08460	MC45_04080	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500
AIT06394.1	AIT07037.1	MC45_08460	MC45_12325	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
AIT06476.1	AIT05716.1	MC45_08975	MC45_04080	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437